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  5. AMTR_s00049p00181100

AMTR_s00049p00181100 (REF6,...)


Aliases : REF6, evm_27.TU.AmTr_v1.0_scaffold00049.175

Description : RNA biosynthesis.transcriptional activation.JUMONJI transcription factor


Gene families : OG0004407 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004407_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00049p00181100

Target Alias Description ECC score Gene Family Method Actions
AT5G04240 ELF6 Zinc finger (C2H2 type) family protein / transcription... 0.03 OrthoFinder output from all 47 species
Adi_g014197 ELF6 histone demethylase *(PKDM9) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene32477.t1 REF6, Aspi01Gene32477 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39866 ELF6 histone demethylase *(PKDM9) & original description: none 0.05 OrthoFinder output from all 47 species
LOC_Os12g18150.1 REF6, LOC_Os12g18150 histone demethylase (PKDM9). transcription factor (JUMONJI) 0.07 OrthoFinder output from all 47 species
Msp_g25734 ELF6 histone demethylase *(PKDM9) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g18890 ELF6 histone demethylase *(PKDM9) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020516 ELF6 histone demethylase *(PKDM9) & original description: CDS=1-5949 0.03 OrthoFinder output from all 47 species
Solyc03g111590.4.1 REF6, Solyc03g111590 histone demethylase (PKDM9). transcription factor (JUMONJI) 0.05 OrthoFinder output from all 47 species
Zm00001e028534_P001 REF6, Zm00001e028534 histone demethylase (PKDM9). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR003347 JmjC_dom 206 325
IPR003349 JmjN 17 50
No external refs found!