AMTR_s00049p00128080 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00049.104

Description : Putative multidrug resistance protein OS=Oryza sativa subsp. japonica

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00049p00128080

Target	Alias	Description	ECC score	Gene Family Method
AT1G02520	PGP11	P-glycoprotein 11	0.03	OrthoFinder output from all 47 species
AT2G39480	PGP6	P-glycoprotein 6	0.03	OrthoFinder output from all 47 species
AT3G55320	PGP20	P-glycoprotein 20	0.03	OrthoFinder output from all 47 species
AT4G01820	PGP3, MDR3	P-glycoprotein 3	0.02	OrthoFinder output from all 47 species
Adi_g019429	PGP20	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g39147	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g15862	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g25151	PGP2	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Als_g09585	PGP10	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Als_g14091	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Als_g14092	PGP21	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g33802	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g32929	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene08455.t1	PGP11, Aspi01Gene08455	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene08469.t1	PGP11, Aspi01Gene08469	subfamily ABCB transporter & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene42794.t1	ATPGP4, PGP4,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0010.g012029	ABCB19,...	subfamily ABCB transporter & original description: CDS=121-4035	0.05	OrthoFinder output from all 47 species
Azfi_s0039.g026389	PGP11	subfamily ABCB transporter & original description: CDS=323-4378	0.04	OrthoFinder output from all 47 species
Azfi_s0230.g059155	No alias	not classified & original description: CDS=1-966	0.04	OrthoFinder output from all 47 species
Azfi_s2496.g111845	ABCB19,...	subfamily ABCB transporter & original description: CDS=142-3066	0.04	OrthoFinder output from all 47 species
Ceric.35G032800.1	ABCB19,...	subfamily ABCB transporter & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000293.10	PGP11	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
Dac_g10485	ABCB14, ATABCB14, PGP14	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g12528	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g12633	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g14063	PGP11	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g12010	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Gb_08707	No alias	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
Gb_11202	PGP11	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_20009	PGP6	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Gb_31652	PGP6	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
LOC_Os01g34970.1	PGP11, LOC_Os01g34970	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
LOC_Os01g74470.1	PGP20, LOC_Os01g74470	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
LOC_Os04g54930.1	ABCB19,...	subfamily ABCB transporter	0.05	OrthoFinder output from all 47 species
Len_g14182	PGP13	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
MA_10432169g0010	PGP11	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
MA_11459g0010	No alias	Putative multidrug resistance protein OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
MA_1824g0020	No alias	subfamily ABCB transporter	0.05	OrthoFinder output from all 47 species
MA_9253g0010	No alias	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Mp2g06270.1	PGP20	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Mp2g11920.1	ABCB19,...	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Msp_g35589	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g03862	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g28031	ABCB19,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g03284	PGP13	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g04001	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g60298	PGP2	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000035	PGP13	subfamily ABCB transporter & original description: CDS=555-4511	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006153	PGP11	subfamily ABCB transporter & original description: CDS=261-4235	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006646	PGP20	subfamily ABCB transporter & original description: CDS=24-3872	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012919	ABCB19,...	subfamily ABCB transporter & original description: CDS=118-4143	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0809.g027741	PGP20	subfamily ABCB transporter & original description: CDS=203-3700	0.02	OrthoFinder output from all 47 species
Smo169182	ATPGP4, PGP4, ABCB4, MDR4	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Solyc02g087870.3.1	ABCB19,...	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Solyc06g009290.4.1	PGP21, Solyc06g009290	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Spa_g06203	PGP13	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g47519	PGP2	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g08541	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e017014_P001	ALA2, Zm00001e017014	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e021746_P001	PGP1, ABCB1,...	ABC transporter B family member 2 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006810	transport	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
CC	GO:0016459	myosin complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	751	831
IPR003439	ABC_transporter-like_ATP-bd	107	232

External Links

No external refs found!

AMTR_s00049p00128080 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation