LOC_Os09g39970.1


Description : Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana (sp|q9fnd7|pp410_arath : 330.0) & Enzyme classification.EC_3 hydrolases.EC_3.1 hydrolase acting on ester bond(50.3.1 : 140.7)


Gene families : OG_01_0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0000000 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_03_0001700 (SeedPlants) Phylogenetic Tree(s): OG_03_0001700_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g39970.1
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00252350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22690... 0.05 Archaeplastida
AMTR_s00022p00023600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g50270... 0.03 Archaeplastida
AMTR_s00041p00129840 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.04 Archaeplastida
Gb_17428 No alias Pentatricopeptide repeat-containing protein At4g04370... 0.04 Archaeplastida
Pp3c22_1710V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Smo105356 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 Archaeplastida
Smo442088 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.03 Archaeplastida
AMTR_s00016p00166520 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 LandPlants
AMTR_s00022p00023600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g50270... 0.03 LandPlants
MA_64083g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 LandPlants
Pp3c22_1710V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
Smo105356 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 LandPlants
Smo228785 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 LandPlants
AMTR_s00149p00041190 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.1 hydrolase... 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 265 312
IPR032867 DYW_dom 439 541
No external refs found!