AMTR_s00048p00181490 (CMT2,...)

Aliases : CMT2, evm_27.TU.AmTr_v1.0_scaffold00048.135

Description : Chromatin organisation.DNA methylation.RNA-independent DNA methylation.CMT DNA chromomethylase

Gene families : OG0002093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002093_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00048p00181490

Target	Alias	Description	ECC score	Gene Family Method
Adi_g014234	CMT2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g060185	CMT3	DNA chromomethylase *(CMT) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g089629	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g09491	CMT3	DNA chromomethylase *(CMT) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g30424	CMT3	DNA chromomethylase *(CMT) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g28229	CMT2	DNA chromomethylase *(CMT) & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g10939	CMT3	DNA chromomethylase *(CMT) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.12G007000.1	CMT3, Ceric.12G007000	DNA chromomethylase *(CMT) & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g50047	CMT2	DNA chromomethylase *(CMT) & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os10g01570.1	CMT3, LOC_Os10g01570	DNA chromomethylase (CMT)	0.02	OrthoFinder output from all 47 species
Len_g24159	CMT3	DNA chromomethylase *(CMT) & original description: none	0.02	OrthoFinder output from all 47 species
Mp6g08650.1	CMT3	DNA chromomethylase (CMT)	0.03	OrthoFinder output from all 47 species
Pir_g07202	CMT3	DNA chromomethylase *(CMT) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g62076	CMT3	DNA chromomethylase *(CMT) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0222.g026232	CMT3	DNA chromomethylase *(CMT) & original description: CDS=250-2766	0.03	OrthoFinder output from all 47 species
Solyc01g006100.4.1	CMT3, Solyc01g006100	DNA chromomethylase (CMT)	0.02	OrthoFinder output from all 47 species
Solyc12g100330.2.1	CMT3, Solyc12g100330	DNA chromomethylase (CMT)	0.02	OrthoFinder output from all 47 species
Spa_g26095	CMT3	DNA chromomethylase *(CMT) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g10202	CMT3	DNA chromomethylase *(CMT) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044728	DNA methylation or demethylation	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001025	BAH_dom	456	569
IPR001525	C5_MeTfrase	785	1147
IPR023780	Chromo_domain	738	776

External Links

No external refs found!

AMTR_s00048p00181490 (CMT2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation