AMTR_s00047p00209120 (ATRGP1, RGP1,...)

Aliases : ATRGP1, RGP1, evm_27.TU.AmTr_v1.0_scaffold00047.149

Description : Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-L-arabinose synthesis.UDP-L-arabinose mutase

Gene families : OG0001238 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001238_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00047p00209120

Target	Alias	Description	ECC score	Gene Family Method
AT5G15650	RGP2, ATRGP2	reversibly glycosylated polypeptide 2	0.06	OrthoFinder output from all 47 species
Ala_g06621	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g04276	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g07439	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os03g40270.1	RGP2, ATRGP2,...	UDP-L-arabinose mutase	0.03	OrthoFinder output from all 47 species
LOC_Os04g56520.2	LOC_Os04g56520	UDP-L-arabinose mutase	0.07	OrthoFinder output from all 47 species
Msp_g02764	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g18722	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g01554	RGP3, RGP	UDP-L-arabinose mutase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g15549	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g44786	RGP3, RGP	UDP-L-arabinose mutase & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013218	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: CDS=186-1241	0.02	OrthoFinder output from all 47 species
Smo140071	ATRGP1, RGP1	Carbohydrate metabolism.nucleotide sugar...	0.02	OrthoFinder output from all 47 species
Solyc04g005340.2.1	ATRGP1, RGP1,...	UDP-L-arabinose mutase	0.04	OrthoFinder output from all 47 species
Spa_g17383	RGP3, RGP	UDP-L-arabinose mutase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e012459_P003	RGP2, ATRGP2,...	UDP-L-arabinose mutase	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	IEA	Interproscan
BP	GO:0030243	cellulose metabolic process	None	Extended
BP	GO:0030244	cellulose biosynthetic process	IEA	Interproscan
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0051274	beta-glucan biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	IEP	HCCA
BP	GO:0006855	xenobiotic transmembrane transport	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015297	antiporter activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019720	Mo-molybdopterin cofactor metabolic process	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
BP	GO:0032324	molybdopterin cofactor biosynthetic process	IEP	HCCA
BP	GO:0042908	xenobiotic transport	IEP	HCCA
BP	GO:0043545	molybdopterin cofactor metabolic process	IEP	HCCA
BP	GO:0051189	prosthetic group metabolic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004901	RGP	7	346

External Links

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AMTR_s00047p00209120 (ATRGP1, RGP1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation