AMTR_s00047p00208430 (TTN8, ATSMC1, SMC1,...)

Aliases : TTN8, ATSMC1, SMC1, evm_27.TU.AmTr_v1.0_scaffold00047.147

Description : Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SMC1/TTN8 component

Gene families : OG0004293 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004293_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00047p00208430

Target	Alias	Description	ECC score	Gene Family Method
AT3G54670	TTN8, ATSMC1, SMC1	Structural maintenance of chromosomes (SMC) family protein	0.06	OrthoFinder output from all 47 species
Adi_g010815	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.02	OrthoFinder output from all 47 species
Aev_g04880	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.02	OrthoFinder output from all 47 species
Ala_g02668	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Ceric.32G063300.1	TTN8, ATSMC1,...	component *(SMC1/TTN8) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020553.145	TTN8, ATSMC1, SMC1	Cell cycle.mitosis and meiosis.sister chromatid...	0.02	OrthoFinder output from all 47 species
Cre15.g635800	TTN8, ATSMC1, SMC1	Structural maintenance of chromosomes protein 1...	0.02	OrthoFinder output from all 47 species
Ehy_g01679	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.02	OrthoFinder output from all 47 species
GSVIVT01028343001	TTN8, ATSMC1, SMC1	Cell cycle.mitosis and meiosis.sister chromatid...	0.05	OrthoFinder output from all 47 species
LOC_Os12g44390.1	TTN8, ATSMC1,...	component SMC1/TTN8 of cohesin regulator complex	0.03	OrthoFinder output from all 47 species
Len_g15272	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
MA_10429667g0010	TTN8, ATSMC1, SMC1	Structural maintenance of chromosomes protein 1...	0.03	OrthoFinder output from all 47 species
MA_15758g0010	TTN8, ATSMC1, SMC1	Structural maintenance of chromosomes protein 1...	0.04	OrthoFinder output from all 47 species
Msp_g15568	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Ore_g08908	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Ore_g13217	TTN8, ATSMC1, SMC1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g01407	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.05	OrthoFinder output from all 47 species
Sam_g38474	No alias	component *(SMC1/TTN8) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Smo236008	TTN8, ATSMC1, SMC1	Structural maintenance of chromosomes protein 1...	0.03	OrthoFinder output from all 47 species
Solyc06g083870.3.1	TTN8, ATSMC1,...	component SMC1/TTN8 of cohesin regulator complex	0.06	OrthoFinder output from all 47 species
Zm00001e003843_P001	TTN8, ATSMC1,...	component SMC1/TTN8 of cohesin regulator complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0051276	chromosome organization	IEA	Interproscan
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003924	GTPase activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
MF	GO:0018024	histone lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0042054	histone methyltransferase activity	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003395	RecF/RecN/SMC_N	10	138
IPR010935	SMC_hinge	517	563

External Links

No external refs found!

AMTR_s00047p00208430 (TTN8, ATSMC1, SMC1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation