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  5. AMTR_s00047p00199030

AMTR_s00047p00199030 (CRC,...)


Aliases : CRC, evm_27.TU.AmTr_v1.0_scaffold00047.126

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.YABBY transcription factor


Gene families : OG0002690 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002690_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00047p00199030
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AT1G23420 INO Plant-specific transcription factor YABBY family protein 0.08 OrthoFinder output from all 47 species
AT1G69180 CRC Plant-specific transcription factor YABBY family protein 0.04 OrthoFinder output from all 47 species
AT2G26580 YAB5 plant-specific transcription factor YABBY family protein 0.04 OrthoFinder output from all 47 species
AT4G00180 YAB3 Plant-specific transcription factor YABBY family protein 0.03 OrthoFinder output from all 47 species
GSVIVT01012246001 CRC RNA biosynthesis.transcriptional activation.C2C2... 0.06 OrthoFinder output from all 47 species
LOC_Os03g44710.2 YAB5, LOC_Os03g44710 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
LOC_Os07g06620.2 YAB2, LOC_Os07g06620 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
LOC_Os10g36420.1 AFO, YAB1, FIL,... transcription factor (YABBY) 0.06 OrthoFinder output from all 47 species
LOC_Os12g42610.1 YAB5, LOC_Os12g42610 transcription factor (YABBY) 0.04 OrthoFinder output from all 47 species
Solyc01g010240.3.1 CRC, Solyc01g010240 transcription factor (YABBY) 0.06 OrthoFinder output from all 47 species
Solyc05g005240.2.1 INO, Solyc05g005240 transcription factor (YABBY) 0.02 OrthoFinder output from all 47 species
Solyc06g073920.3.1 YAB2, Solyc06g073920 transcription factor (YABBY) 0.09 OrthoFinder output from all 47 species
Solyc07g008180.4.1 YAB5, Solyc07g008180 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
Solyc08g079100.3.1 AFO, YAB1, FIL,... transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
Zm00001e000845_P005 CRC, Zm00001e000845 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
Zm00001e003268_P003 AFO, YAB1, FIL,... transcription factor (YABBY) 0.04 OrthoFinder output from all 47 species
Zm00001e004396_P001 AFO, YAB1, FIL,... transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
Zm00001e012387_P001 YAB5, Zm00001e012387 transcription factor (YABBY) 0.08 OrthoFinder output from all 47 species
Zm00001e012388_P001 YAB5, Zm00001e012388 transcription factor (YABBY) 0.06 OrthoFinder output from all 47 species
Zm00001e017951_P002 YAB5, Zm00001e017951 transcription factor (YABBY) 0.04 OrthoFinder output from all 47 species
Zm00001e032845_P002 YAB2, Zm00001e032845 transcription factor (YABBY) 0.07 OrthoFinder output from all 47 species
Zm00001e038717_P002 CRC, Zm00001e038717 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003855 3-dehydroquinate dehydratase activity IEP HCCA
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006855 xenobiotic transmembrane transport IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0042908 xenobiotic transport IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0051015 actin filament binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR006780 YABBY 7 146
No external refs found!