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  5. AMTR_s00046p00227790

AMTR_s00046p00227790 (NFD2, HMG BETA 1,...)


Aliases : NFD2, HMG BETA 1, HMGB2, NFD02, evm_27.TU.AmTr_v1.0_scaffold00046.168

Description : HMG1/2-like protein OS=Vicia faba


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00046p00227790
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AT2G17560 NFD4, HMGB4, NFD04 high mobility group B4 0.05 OrthoFinder output from all 47 species
Adi_g012117 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Ala_g38414 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene12168.t1 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene51644.t1 NFD03, HMGB3,... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0132.g049182 NFD2, HMG BETA... not classified & original description: CDS=249-659 0.04 OrthoFinder output from all 47 species
Azfi_s0242.g059828 NFD03, HMGB3, NFD3 not classified & original description: CDS=1-552 0.04 OrthoFinder output from all 47 species
GSVIVT01013385001 NFD2, HMG BETA... HMG1/2-like protein OS=Glycine max 0.05 OrthoFinder output from all 47 species
Gb_05796 NFD2, HMG BETA... High mobility group B protein 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Lfl_g32302 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_72555g0010 NFD2, HMG BETA... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ppi_g49551 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36464 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Sam_g41447 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004129 cytochrome-c oxidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005758 mitochondrial intermembrane space IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006825 copper ion transport IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
MF GO:0016530 metallochaperone activity IEP HCCA
MF GO:0016531 copper chaperone activity IEP HCCA
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
CC GO:0031970 organelle envelope lumen IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 8 77
No external refs found!