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  5. AMTR_s00046p00227230

AMTR_s00046p00227230 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00046.167

Description : Uncharacterized protein At4g37920 OS=Arabidopsis thaliana


Gene families : OG0002549 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002549_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00046p00227230
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AT4G37920 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.03 OrthoFinder output from all 47 species
Aob_g23821 No alias regulatory factor *(RP8) of RNA polymerase RpoA activity... 0.02 OrthoFinder output from all 47 species
Cba_g01017 No alias regulatory factor *(RP8) of RNA polymerase RpoA activity... 0.04 OrthoFinder output from all 47 species
Ceric.01G022600.1 Ceric.01G022600 not classified & original description: pacid=50591478... 0.04 OrthoFinder output from all 47 species
Ceric.23G023200.1 Ceric.23G023200 not classified & original description: pacid=50611197... 0.04 OrthoFinder output from all 47 species
GSVIVT01003846001 No alias Uncharacterized protein At4g37920 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01008964001 No alias Uncharacterized protein At4g37920 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os01g20110.1 LOC_Os01g20110 Uncharacterized protein At4g37920 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Len_g18242 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_77650g0010 No alias Uncharacterized protein At4g37920 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Mp6g13740.1 No alias Uncharacterized protein At4g37920 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Pir_g08912 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12165 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017048 No alias not classified & original description: CDS=50-1423 0.02 OrthoFinder output from all 47 species
Solyc02g091640.3.1 Solyc02g091640 Uncharacterized protein At4g37920 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g04497 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g20450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!