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  5. AMTR_s00045p00231470

AMTR_s00045p00231470 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.337

Description : Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus


Gene families : OG0002525 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002525_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00045p00231470

Target Alias Description ECC score Gene Family Method Actions
AT3G06880 No alias Transducin/WD40 repeat-like superfamily protein 0.02 OrthoFinder output from all 47 species
GSVIVT01009918001 PUB8, B80 External stimuli response.biotic... 0.03 OrthoFinder output from all 47 species
GSVIVT01035145001 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.06 OrthoFinder output from all 47 species
Gb_38779 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.03 OrthoFinder output from all 47 species
LOC_Os02g07190.1 LOC_Os02g07190 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.03 OrthoFinder output from all 47 species
MA_87817g0010 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.03 OrthoFinder output from all 47 species
Solyc01g006380.2.1 Solyc01g006380 Putative E3 ubiquitin-protein ligase LIN OS=Medicago... 0.03 OrthoFinder output from all 47 species
Solyc01g066740.3.1 Solyc01g066740 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.03 OrthoFinder output from all 47 species
Zm00001e016398_P001 Zm00001e016398 ubiquitin E3 ligase (CERBERUS/LIN) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005856 cytoskeleton IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 1035 1071
No external refs found!