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  5. AMTR_s00045p00227490

AMTR_s00045p00227490


Description : Cell cycle.mitosis and meiosis.chromatin condensation.condensin II complex.CAP-D2B component


Gene families : OG0008196 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008196_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00227490
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Als_g15728 No alias component *(CAP-D2B) of condensin II complex & original... 0.09 OrthoFinder output from all 47 species
Aop_g06266 No alias component *(CAP-D2B) of condensin II complex & original... 0.1 OrthoFinder output from all 47 species
Aspi01Gene59031.t1 Aspi01Gene59031 component *(CAP-D2B) of condensin II complex & original... 0.06 OrthoFinder output from all 47 species
Azfi_s0136.g050948 No alias component *(CAP-D2B) of condensin II complex & original... 0.06 OrthoFinder output from all 47 species
Ceric.01G026000.1 Ceric.01G026000 component *(CAP-D2B) of condensin II complex & original... 0.22 OrthoFinder output from all 47 species
Cre05.g241150 No alias Cell cycle.mitosis and meiosis.chromatin... 0.05 OrthoFinder output from all 47 species
Dac_g36324 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dac_g41476 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g14984 No alias component *(CAP-D2B) of condensin II complex & original... 0.21 OrthoFinder output from all 47 species
GSVIVT01017722001 No alias Cell cycle.mitosis and meiosis.chromatin... 0.22 OrthoFinder output from all 47 species
Gb_33189 No alias component CAP-D2B of condensin II complex 0.12 OrthoFinder output from all 47 species
LOC_Os12g36170.1 LOC_Os12g36170 component CAP-D2B of condensin II complex 0.17 OrthoFinder output from all 47 species
Len_g59607 No alias component *(CAP-D2B) of condensin II complex & original... 0.03 OrthoFinder output from all 47 species
MA_8028g0010 No alias component CAP-D2B of condensin II complex 0.14 OrthoFinder output from all 47 species
MA_92126g0010 No alias component CAP-D2B of condensin II complex 0.17 OrthoFinder output from all 47 species
Mp4g01570.1 No alias component CAP-D2B of condensin II complex 0.16 OrthoFinder output from all 47 species
Msp_g01246 No alias component *(CAP-D2B) of condensin II complex & original... 0.09 OrthoFinder output from all 47 species
Nbi_g09903 No alias component *(CAP-D2B) of condensin II complex & original... 0.21 OrthoFinder output from all 47 species
Ppi_g14228 No alias component *(CAP-D2B) of condensin II complex & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005664 No alias component *(CAP-D2B) of condensin II complex & original... 0.09 OrthoFinder output from all 47 species
Smo149363 No alias Cell cycle.mitosis and meiosis.chromatin... 0.02 OrthoFinder output from all 47 species
Solyc12g099510.3.1 Solyc12g099510 component CAP-D2B of condensin II complex 0.05 OrthoFinder output from all 47 species
Tin_g09167 No alias component *(CAP-D2B) of condensin II complex & original... 0.11 OrthoFinder output from all 47 species
Zm00001e039691_P001 Zm00001e039691 component CAP-D2B of condensin II complex 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0042555 MCM complex IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!