1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00045p00214370

AMTR_s00045p00214370 (emb1644,...)


Aliases : emb1644, evm_27.TU.AmTr_v1.0_scaffold00045.298

Description : RNA processing.RNA splicing.U6-associated LSm accessory ribonucleoprotein complex.LSm4 component


Gene families : OG0005093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005093_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00214370

Target Alias Description ECC score Gene Family Method Actions
Aop_g29927 emb1644 component *(LSm4) of U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Aspi01Gene17196.t1 emb1644, Aspi01Gene17196 component *(LSm4) of U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Ceric.34G061500.1 emb1644, Ceric.34G061500 component *(LSm4) of U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000480.60 emb1644 RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
Cre06.g251300 emb1644 RNA processing.RNA splicing.U6-associated LSm accessory... 0.04 OrthoFinder output from all 47 species
Msp_g27126 emb1644 component *(LSm4) of U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Ore_g21215 emb1644 component *(LSm4) of U6-associated LSm accessory... 0.04 OrthoFinder output from all 47 species
Tin_g05289 emb1644 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e017261_P001 emb1644, Zm00001e017261 component LSm4 of U6-associated LSm accessory... 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 6 69
No external refs found!