AMTR_s00045p00213360 (PMS1,...)


Aliases : PMS1, evm_27.TU.AmTr_v1.0_scaffold00045.296

Description : DNA damage response.DNA repair mechanisms.mismatch repair (MMR).MLH1-PMS1 heterodimer.PMS1 component


Gene families : OG0005197 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005197_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00213360

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01027985001 PMS1 DNA damage response.DNA repair mechanisms.mismatch... 0.02 OrthoFinder output from all 47 species
LOC_Os02g37920.1 PMS1, LOC_Os02g37920 component PMS1 of MLH1-PMS1 heterodimer 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
InterPro domains Description Start Stop
IPR013507 DNA_mismatch_S5_2-like 220 338
IPR014790 MutL_C 765 923
No external refs found!