1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00045p00200410

AMTR_s00045p00200410 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.259

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS21 component


Gene families : OG0004049 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004049_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00200410
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT3G53890 No alias Ribosomal protein S21e 0.08 OrthoFinder output from all 47 species
AT5G27700 No alias Ribosomal protein S21e 0.07 OrthoFinder output from all 47 species
Aev_g32732 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Als_g29961 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aop_g23096 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Azfi_s0022.g016110 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Azfi_s0185.g056623 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Azfi_s2932.g113764 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Cba_g37485 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cba_g46482 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Ceric.37G056600.1 Ceric.37G056600 component *(eS21) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020780.14 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Cre03.g203450 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 OrthoFinder output from all 47 species
Dcu_g13598 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g34795 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g35214 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Dde_g15855 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01017756001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder output from all 47 species
GSVIVT01031151001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
Gb_27652 No alias component RPS21 of SSU proteome 0.05 OrthoFinder output from all 47 species
Gb_35516 No alias component RPS21 of SSU proteome 0.1 OrthoFinder output from all 47 species
LOC_Os03g46490.1 LOC_Os03g46490 component RPS21 of SSU proteome 0.07 OrthoFinder output from all 47 species
MA_73657g0010 No alias component RPS21 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp4g22150.1 No alias component RPS21 of SSU proteome 0.13 OrthoFinder output from all 47 species
Pp3c24_8160V3.1 Pp3c24_8160 Ribosomal protein S21e 0.02 OrthoFinder output from all 47 species
Pp3c26_3000V3.1 Pp3c26_3000 Ribosomal protein S21e 0.04 OrthoFinder output from all 47 species
Sam_g07802 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Sam_g07803 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Smo271040 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Solyc01g066840.3.1 Solyc01g066840 component RPS21 of SSU proteome 0.07 OrthoFinder output from all 47 species
Solyc04g074910.3.1 Solyc04g074910 component RPS21 of SSU proteome 0.05 OrthoFinder output from all 47 species
Spa_g19976 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e001637_P002 Zm00001e001637 component RPS21 of SSU proteome 0.11 OrthoFinder output from all 47 species
Zm00001e011684_P002 Zm00001e011684 component RPS21 of SSU proteome 0.09 OrthoFinder output from all 47 species
Zm00001e031393_P002 Zm00001e031393 component RPS21 of SSU proteome 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR001931 Ribosomal_S21e 1 77
No external refs found!