AMTR_s00045p00153850 (FHY2, HY8, PHYA,...)

Aliases : FHY2, HY8, PHYA, FRE1, evm_27.TU.AmTr_v1.0_scaffold00045.165

Description : External stimuli response.light.red/far red light.PHY phytochrome photoreceptor

Gene families : OG0000699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000699_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00045p00153850
Cluster	HCCA: Cluster_117

Target	Alias	Description	ECC score	Gene Family Method
Aob_g02397	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene09133.t1	HY3, OOP1, PHYB,...	temperature sensor protein *(PHY-B) & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g04116	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g14275	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g20972	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g26723	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01021381001	PHYE	External stimuli response.temperature.temperature...	0.06	OrthoFinder output from all 47 species
Len_g22734	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g05031	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g06926	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g24766	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021936	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original...	0.02	OrthoFinder output from all 47 species
Sam_g09219	No alias	phytochrome photoreceptor *(PHY) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g11691	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo161430	HY3, OOP1, PHYB	External stimuli response.temperature.temperature...	0.03	OrthoFinder output from all 47 species
Solyc07g045480.3.1	PHYC, Solyc07g045480	phytochrome photoreceptor (PHY)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEA	Interproscan
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	None	Extended
MF	GO:0004673	protein histidine kinase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0007165	signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009584	detection of visible light	IEA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016301	kinase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0018298	obsolete protein-chromophore linkage	IEA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140299	small molecule sensor activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
MF	GO:0000156	phosphorelay response regulator activity	IEP	HCCA
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0009039	urease activity	IEP	HCCA
MF	GO:0016151	nickel cation binding	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019627	urea metabolic process	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043419	urea catabolic process	IEP	HCCA
BP	GO:0043605	amide catabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0071941	nitrogen cycle metabolic process	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013767	PAS_fold	744	866
IPR013767	PAS_fold	614	728
IPR003594	HATPase_C	1000	1107
IPR013654	PAS_2	67	183
IPR013515	Phytochrome_cen-reg	406	582
IPR003018	GAF	216	394
IPR003661	HisK_dim/P	892	949

External Links

No external refs found!

AMTR_s00045p00153850 (FHY2, HY8, PHYA,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation