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  5. AMTR_s00045p00130470

AMTR_s00045p00130470 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.128

Description : Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00130470

Target Alias Description ECC score Gene Family Method Actions
AT1G55630 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT1G71060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g057762 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06010 No alias group-II intron mitochondrial splicing factor *(MISF68)... 0.02 OrthoFinder output from all 47 species
Aspi01Gene63896.t1 Aspi01Gene63896 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39023 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Gb_32987 No alias Pentatricopeptide repeat-containing protein At5g18390,... 0.04 OrthoFinder output from all 47 species
Len_g19159 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06707 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
MA_10434927g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pir_g38104 No alias splicing factor *(SLO3) & original description: none 0.07 OrthoFinder output from all 47 species
Pnu_g13278 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g12536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 272 316
IPR002885 Pentatricopeptide_repeat 410 455
IPR002885 Pentatricopeptide_repeat 340 384
IPR002885 Pentatricopeptide_repeat 511 558
IPR002885 Pentatricopeptide_repeat 235 264
IPR002885 Pentatricopeptide_repeat 480 509
IPR002885 Pentatricopeptide_repeat 623 652
No external refs found!