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  5. AMTR_s00045p00052450

AMTR_s00045p00052450 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.34

Description : RNA biosynthesis.transcriptional activation.CAMTA transcription factor


Gene families : OG0000648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000648_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00052450

Target Alias Description ECC score Gene Family Method Actions
AT1G67310 No alias Calmodulin-binding transcription activator protein with... 0.04 OrthoFinder output from all 47 species
Adi_g081423 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07998 No alias CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g13891 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13747 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene55577.t1 Aspi01Gene55577 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene55581.t1 Aspi01Gene55581 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12559 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g35915 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21923 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000048 IQ_motif_EF-hand-BS 955 974
IPR000048 IQ_motif_EF-hand-BS 980 998
IPR005559 CG-1_dom 16 132
IPR020683 DUF3447 732 803
No external refs found!