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Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.30
Description : Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00045p00048330 | |
| Cluster | HCCA: Cluster_92 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g048131 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g082696 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g089352 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g32925 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g06301 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g06917 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g17004 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g36540 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g18934 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g26559 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g09923 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g22581 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g28594 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g18871 | REME1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g67897 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g68032 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g70336 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene01654.t1 | PTAC9, OSB2,... | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene36332.t1 | Aspi01Gene36332 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene44213.t1 | Aspi01Gene44213 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene48516.t1 | Aspi01Gene48516 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene52005.t1 | Aspi01Gene52005 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene55895.t1 | Aspi01Gene55895 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene56635.t1 | Aspi01Gene56635 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0005.g009143 | No alias | not classified & original description: CDS=1-4677 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0015.g013865 | No alias | not classified & original description: CDS=1-1626 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0032.g024917 | No alias | not classified & original description: CDS=1-3621 | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.16G011900.1 | EMB2758, Ceric.16G011900 | not classified & original description: pacid=50589297... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.20G008800.1 | Ceric.20G008800 | not classified & original description: pacid=50566037... | 0.03 | OrthoFinder output from all 47 species | |
| Cre12.g483700 | OSB4 | Cell cycle.organelle machineries.DNA... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g02910 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g03777 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g03810 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g07774 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g19071 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g21997 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g23705 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g22763 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g37663 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g43324 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g03570 | EMB2758 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g23821 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g25445 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g25743 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g46323 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g50575 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g17807 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01011501001 | No alias | Pentatricopeptide repeat-containing protein At5g39350... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01027525001 | LPA66 | Pentatricopeptide repeat-containing protein At4g21065... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os03g44210.2 | LOC_Os03g44210 | RNA editing factor (SEL1/PDM1) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g63260.3 | LOC_Os03g63260 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os07g10400.1 | CRR22, LOC_Os07g10400 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os08g25280.1 | LOC_Os08g25280 | Pentatricopeptide repeat-containing protein At4g39530... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os09g24640.1 | REME1, LOC_Os09g24640 | Pentatricopeptide repeat-containing protein At2g36730... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g16975 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g18318 | OTP84 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Len_g18962 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g18973 | OTP84 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g06708 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g17485 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g32919 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_38395g0010 | CRR22 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_5858185g0010 | No alias | Pentatricopeptide repeat-containing protein At4g30700... | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g16442 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g04779 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g12994 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g30107 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g30301 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0099.g019544 | OSB3 | ssDNA-binding protein *(OSB) & original description: CDS=30-812 | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0099.g019577 | No alias | not classified & original description: CDS=1-2622 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g16066 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g50005 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Smo173139 | VAC1, ECB2, ATECB2 | Pentatricopeptide repeat-containing protein At4g13650... | 0.02 | OrthoFinder output from all 47 species | |
| Smo30095 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.03 | OrthoFinder output from all 47 species | |
| Smo399 | No alias | Pentatricopeptide repeat-containing protein At3g03580... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc07g053520.2.1 | SLO1, Solyc07g053520 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g16937 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g17850 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g18963 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g20079 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g21545 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g25939 | OTP86 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g50618 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g55537 | DOT4 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g55588 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g26745 | OTP86 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g27705 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g44228 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e034478_P001 | Zm00001e034478 | Pentatricopeptide repeat-containing protein At3g24000,... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e039394_P003 | Zm00001e039394 | Pentatricopeptide repeat-containing protein At5g04780,... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 352 | 374 |
| IPR002885 | Pentatricopeptide_repeat | 279 | 308 |
| IPR002885 | Pentatricopeptide_repeat | 49 | 70 |
| IPR002885 | Pentatricopeptide_repeat | 453 | 476 |
| IPR002885 | Pentatricopeptide_repeat | 522 | 547 |
| IPR002885 | Pentatricopeptide_repeat | 77 | 104 |
| IPR002885 | Pentatricopeptide_repeat | 175 | 222 |
| IPR002885 | Pentatricopeptide_repeat | 377 | 425 |
| No external refs found! |