1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00044p00204550

AMTR_s00044p00204550 (LINC4,...)


Aliases : LINC4, evm_27.TU.AmTr_v1.0_scaffold00044.217

Description : Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear lamina.CRWN lamin-like protein


Gene families : OG0002096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002096_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00044p00204550

Target Alias Description ECC score Gene Family Method Actions
AT1G68790 LINC3 little nuclei3 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010369 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Cba_g07777 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Ceric.07G023500.1 LINC2, Ceric.07G023500 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Dac_g23399 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01007428001 LINC4 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.03 OrthoFinder output from all 47 species
GSVIVT01031076001 LINC1 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.03 OrthoFinder output from all 47 species
LOC_Os02g48010.1 LINC1, LOC_Os02g48010 CRWN nuclear lamina lamin-like protein 0.04 OrthoFinder output from all 47 species
Ore_g19679 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Pir_g40515 LINC1 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g11617 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Solyc02g089800.3.1 LINC1, Solyc02g089800 CRWN nuclear lamina lamin-like protein 0.04 OrthoFinder output from all 47 species
Solyc03g045050.4.1 LINC1, Solyc03g045050 CRWN nuclear lamina lamin-like protein 0.03 OrthoFinder output from all 47 species
Zm00001e019705_P002 LINC4, Zm00001e019705 CRWN nuclear lamina lamin-like protein 0.03 OrthoFinder output from all 47 species
Zm00001e023357_P001 LINC1, Zm00001e023357 CRWN nuclear lamina lamin-like protein 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0007154 cell communication IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!