AMTR_s00041p00167350

Description : External stimuli response.temperature.Csd (cold-shock-domain) protein

Gene families : OG0001037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001037_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00041p00167350

Target	Alias	Description	ECC score	Gene Family Method
Adi_g102537	ATCSP2, GRP2, CSDP2, CSP2	cold-responsive mRNA chaperone *(CSD) & original...	0.02	OrthoFinder output from all 47 species
Aev_g22993	ATCSP2, GRP2, CSDP2, CSP2	cold-responsive mRNA chaperone *(CSD) & original...	0.03	OrthoFinder output from all 47 species
Als_g03295	GRP2B, ATGRP2B, ATCSP4	cold-responsive mRNA chaperone *(CSD) & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000093.10	No alias	Cold shock protein 1 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Lfl_g23689	GRP2B, ATGRP2B, ATCSP4	cold-responsive mRNA chaperone *(CSD) & original...	0.02	OrthoFinder output from all 47 species
Lfl_g27133	GRP2B, ATGRP2B, ATCSP4	cold-responsive mRNA chaperone *(CSD) & original...	0.04	OrthoFinder output from all 47 species
Pnu_g20698	ATCSP2, GRP2, CSDP2, CSP2	cold-responsive mRNA chaperone *(CSD) & original...	0.03	OrthoFinder output from all 47 species
Sam_g45087	No alias	cold-responsive mRNA chaperone *(CSD) & original...	0.02	OrthoFinder output from all 47 species
Tin_g19963	ATCSP2, GRP2, CSDP2, CSP2	cold-responsive mRNA chaperone *(CSD) & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0004611	phosphoenolpyruvate carboxykinase activity	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006099	tricarboxylic acid cycle	IEP	HCCA
MF	GO:0008964	phosphoenolpyruvate carboxylase activity	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0015977	carbon fixation	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002059	CSP_DNA-bd	4	68
IPR001878	Znf_CCHC	140	156
IPR001878	Znf_CCHC	173	189

External Links

No external refs found!

AMTR_s00041p00167350

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation