AMTR_s00041p00147950 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00041.104

Description : RNA biosynthesis.transcriptional activation.Trihelix transcription factor


Gene families : OG0000556 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000556_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00041p00147950

Target Alias Description ECC score Gene Family Method Actions
AT1G33240 AT-GTL1, GTL1, AT-GTL2 GT-2-like 1 0.03 OrthoFinder output from all 47 species
Adi_g062121 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06698 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g08051 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g09478 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18257 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g34081 AT-GTL1, GTL1, AT-GTL2 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50192 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59070 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g02188 AT-GTL1, GTL1, AT-GTL2 Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09047 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g41036 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g22030 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene41238.t1 Aspi01Gene41238 Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene48921.t1 AT-GTL1, GTL1,... Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene54632.t1 Aspi01Gene54632 Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene69749.t1 AT-GTL1, GTL1,... Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71848.t2 Aspi01Gene71848 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0343.g065731 No alias Trihelix-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0506.g073955 AT-GT2, GT2 Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0531.g075823 AT-GT2, GT2 Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g26683 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g72625 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G031000.1 Ceric.03G031000 Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.35G006300.1 Ceric.35G006300 Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dac_g08329 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g08410 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g15364 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g26470 AT-GT2, GT2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03068 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g04858 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g22999 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26855 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08505 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08613 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26898 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27401 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01026588001 No alias RNA biosynthesis.transcriptional activation.Trihelix... 0.03 OrthoFinder output from all 47 species
Gb_38519 No alias transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
LOC_Os02g01380.1 AT-GT2, GT2,... transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
LOC_Os10g37240.4 LOC_Os10g37240 Trihelix transcription factor GT-2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g19098 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19264 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g28070 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04981 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06235 AT-GTL1, GTL1, AT-GTL2 Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_10433499g0020 AT-GT2, GT2 transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
MA_331768g0020 No alias transcription factor (Trihelix) 0.05 OrthoFinder output from all 47 species
MA_47951g0010 No alias transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species
MA_79519g0010 No alias transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
MA_79619g0010 No alias transcription factor (Trihelix) 0.05 OrthoFinder output from all 47 species
Mp8g08100.1 No alias transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
Msp_g06014 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35869 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11220 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g25172 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08779 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g32332 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g59860 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g65125 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16876 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018240 AT-GT2, GT2 Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023173 No alias Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023745 No alias Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Smo85122 No alias Trihelix transcription factor GT-2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc11g005380.2.1 Solyc11g005380 transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
Spa_g51431 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0048037 obsolete cofactor binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!