AMTR_s00041p00118190 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00041.82

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.U-Box E3 ligase activities.PUB-type

Gene families : OG0000782 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000782_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00041p00118190

Target	Alias	Description	ECC score	Gene Family Method
Aev_g04165	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g11501	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g17662	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g07414	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene13185.t1	PUB44, SAUL1,...	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene46642.t1	PUB44, SAUL1,...	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene54979.t1	Aspi01Gene54979	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene54980.t1	Aspi01Gene54980	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene57056.t1	PUB44, SAUL1,...	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g05320	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.05G001500.1	PUB44, SAUL1,...	E3 ubiquitin ligase *(SAUL) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.08G057000.1	Ceric.08G057000	E3 ubiquitin ligase *(SAUL) & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.09G008100.1	PUB44, SAUL1,...	E3 ubiquitin ligase *(SAUL) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.13G068400.1	PUB26, Ceric.13G068400	E3 ubiquitin ligase *(SAUL) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.25G052400.1	Ceric.25G052400	E3 ubiquitin ligase *(SAUL) & original description:...	0.06	OrthoFinder output from all 47 species
Dac_g08170	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g10963	No alias	E3 ubiquitin ligase *(SAUL) & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g10118	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g00928	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g00947	PUB9, ATPUB9	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01000832001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
GSVIVT01018088001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
GSVIVT01027197001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
Gb_00701	ATPUB17, PUB17	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
LOC_Os01g72000.1	LOC_Os01g72000	E3 ubiquitin ligase (PUB)	0.06	OrthoFinder output from all 47 species
Len_g09054	No alias	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
MA_113300g0020	No alias	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
MA_703456g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_90223g0010	No alias	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Msp_g01241	No alias	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g14314	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g16039	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g17308	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g32045	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006708	No alias	E3 ubiquitin ligase *(SAUL) & original description: CDS=350-3358	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014934	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: CDS=655-3684	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019316	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: CDS=1-2505	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0207.g025808	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: CDS=139-3045	0.05	OrthoFinder output from all 47 species
Sam_g28447	No alias	E3 ubiquitin ligase *(SAUL) & original description: none	0.01	OrthoFinder output from all 47 species
Solyc01g068490.4.1	Solyc01g068490	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
Solyc01g096200.4.1	Solyc01g096200	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
Solyc03g082690.3.1	Solyc03g082690	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
Solyc09g083060.4.1	Solyc09g083060	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Spa_g11352	No alias	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g12195	No alias	E3 ubiquiTin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g29203	PUB44, SAUL1, ATPUB44	E3 ubiquiTin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e018652_P001	Zm00001e018652	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0006721	terpenoid metabolic process	IEP	HCCA
BP	GO:0008037	cell recognition	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
MF	GO:0008661	1-deoxy-D-xylulose-5-phosphate synthase activity	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0016114	terpenoid biosynthetic process	IEP	HCCA
MF	GO:0016744	transketolase or transaldolase activity	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	HCCA
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	HCCA
BP	GO:0048544	recognition of pollen	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	265	330

External Links

No external refs found!

AMTR_s00041p00118190 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation