AMTR_s00041p00084080 (P40, AP40, RPSAA,...)

Aliases : P40, AP40, RPSAA, RP40, evm_27.TU.AmTr_v1.0_scaffold00041.50

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPSa component

Gene families : OG0002043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002043_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00041p00084080

Target	Alias	Description	ECC score	Gene Family Method
AT1G72370	P40, AP40, RPSAA, RP40	40s ribosomal protein SA	0.12	OrthoFinder output from all 47 species
Adi_g041732	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ala_g06615	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Als_g05546	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Als_g09687	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g07397	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Azfi_s0252.g060323	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Ceric.10G044300.1	P40, AP40,...	component *(uS2) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Ceric.38G026900.1	P40, AP40,...	component *(uS2) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Cre10.g432800	P40, AP40, RPSAA, RP40	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
Dac_g13313	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g29763	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Dde_g07783	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ehy_g05613	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01016695001	P40, AP40, RPSAA, RP40	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	OrthoFinder output from all 47 species
Gb_02349	P40, AP40, RPSAA, RP40	component RPSa of SSU proteome	0.05	OrthoFinder output from all 47 species
Gb_10091	P40, AP40, RPSAA, RP40	component RPSa of SSU proteome	0.04	OrthoFinder output from all 47 species
LOC_Os03g08440.1	P40, AP40,...	component RPSa of SSU proteome	0.06	OrthoFinder output from all 47 species
LOC_Os07g42450.1	P40, AP40,...	component RPSa of SSU proteome	0.11	OrthoFinder output from all 47 species
Len_g07673	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Len_g11730	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g23586	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g40648	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
MA_10436984g0020	P40, AP40, RPSAA, RP40	component RPSa of SSU proteome	0.09	OrthoFinder output from all 47 species
MA_112104g0010	P40, AP40, RPSAA, RP40	component RPSa of SSU proteome	0.14	OrthoFinder output from all 47 species
Mp2g26290.1	P40, AP40, RPSAA, RP40	component RPSa of SSU proteome	0.14	OrthoFinder output from all 47 species
Msp_g20402	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Nbi_g25259	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Ore_g18180	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pir_g06946	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c14_15670V3.1	P40, AP40,...	40s ribosomal protein SA	0.01	OrthoFinder output from all 47 species
Pp3c14_15700V3.1	P40, AP40,...	40s ribosomal protein SA B	0.07	OrthoFinder output from all 47 species
Pp3c14_17310V3.1	P40, AP40,...	40s ribosomal protein SA B	0.05	OrthoFinder output from all 47 species
Pp3c17_17600V3.1	P40, AP40,...	40s ribosomal protein SA	0.07	OrthoFinder output from all 47 species
Pp3c1_24120V3.1	P40, AP40,...	40s ribosomal protein SA	0.05	OrthoFinder output from all 47 species
Ppi_g02754	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g10537	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g33193	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g05957	No alias	component *(uS2) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g08753	No alias	component *(uS2) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Sam_g08754	No alias	component *(uS2) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Solyc03g019780.4.1	P40, AP40,...	component RPSa of SSU proteome	0.17	OrthoFinder output from all 47 species
Solyc06g072120.3.1	P40, AP40,...	component RPSa of SSU proteome	0.12	OrthoFinder output from all 47 species
Spa_g04678	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Spa_g04679	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Spa_g21179	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Tin_g03323	P40, AP40, RPSAA, RP40	component *(uS2) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e000273_P001	P40, AP40,...	component RPSa of SSU proteome	0.11	OrthoFinder output from all 47 species
Zm00001e010780_P001	P40, AP40,...	component RPSa of SSU proteome	0.12	OrthoFinder output from all 47 species
Zm00001e038859_P001	P40, AP40,...	component RPSa of SSU proteome	0.1	OrthoFinder output from all 47 species
Zm00001e038860_P002	P40, AP40,...	component RPSa of SSU proteome	0.02	OrthoFinder output from all 47 species
Zm00001e038933_P001	P40, AP40,...	component RPSa of SSU proteome	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009147	pyrimidine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009211	pyrimidine deoxyribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009219	pyrimidine deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009394	2'-deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0019692	deoxyribose phosphate metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030337	DNA polymerase processivity factor activity	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
CC	GO:0043626	PCNA complex	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
CC	GO:0044796	DNA polymerase processivity factor complex	IEP	HCCA
BP	GO:0046080	dUTP metabolic process	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
CC	GO:0150005	enzyme activator complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001865	Ribosomal_S2	117	184
IPR001865	Ribosomal_S2	17	112

External Links

No external refs found!

AMTR_s00041p00084080 (P40, AP40, RPSAA,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation