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  5. AMTR_s00041p00057960

AMTR_s00041p00057960 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00041.30

Description : Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana


Gene families : OG0002597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002597_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00041p00057960
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT2G15630 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006784 heme A biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046160 heme a metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 494 541
IPR002885 Pentatricopeptide_repeat 304 348
IPR002885 Pentatricopeptide_repeat 271 291
IPR002885 Pentatricopeptide_repeat 468 491
IPR002885 Pentatricopeptide_repeat 569 589
No external refs found!