AMTR_s00040p00226820 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.268

No description available


Gene families : OG0001920 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001920_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00226820

Target Alias Description ECC score Gene Family Method Actions
Aev_g01433 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g47757 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06919 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.03G090300.1 Ceric.03G090300 not classified & original description: pacid=50572676... 0.02 OrthoFinder output from all 47 species
Dac_g08270 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033764001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01034121001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01034732001 No alias No description available 0.11 OrthoFinder output from all 47 species
LOC_Os01g62670.1 LOC_Os01g62670 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
LOC_Os12g05180.1 LOC_Os12g05180 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g05425 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g29751 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g15418 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g34162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014557 No alias not classified & original description: CDS=1-1887 0.03 OrthoFinder output from all 47 species
Sam_g16767 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g008930.4.1 Solyc09g008930 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc09g089640.2.1 Solyc09g089640 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Solyc10g084880.3.1 Solyc10g084880 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc11g007660.1.1 Solyc11g007660 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Spa_g11435 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e008680_P001 Zm00001e008680 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e019297_P001 Zm00001e019297 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e028760_P001 Zm00001e028760 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR007700 DUF668 388 479
IPR021864 DUF3475 35 91
No external refs found!