1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00040p00158690

AMTR_s00040p00158690 (FAR4,...)


Aliases : FAR4, evm_27.TU.AmTr_v1.0_scaffold00040.133

Description : Cell wall.cutin and suberin.cuticular lipid formation.acyl-reduction pathway.acyl CoA reductase


Gene families : OG0000749 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000749_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00158690
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0003.g007737 MS2, FAR2 not classified & original description: CDS=193-2040 0.03 OrthoFinder output from all 47 species
MA_101858g0010 MS2, FAR2 Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_6164849g0010 MS2, FAR2 acyl CoA reductase 0.05 OrthoFinder output from all 47 species
MA_7146069g0010 MS2, FAR2 Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Ppi_g10289 MS2, FAR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g61112 MS2, FAR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e038924_P001 MS2, FAR2, Zm00001e038924 acyl CoA reductase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005199 structural constituent of cell wall IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR026055 FAR 391 487
IPR013120 Far_NAD-bd 17 319
No external refs found!