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  5. AMTR_s00040p00104960

AMTR_s00040p00104960 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.72

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS14 component


Gene families : OG0001893 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001893_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00104960
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT2G36160 No alias Ribosomal protein S11 family protein 0.29 OrthoFinder output from all 47 species
AT3G11510 No alias Ribosomal protein S11 family protein 0.16 OrthoFinder output from all 47 species
AT3G52580 No alias Ribosomal protein S11 family protein 0.3 OrthoFinder output from all 47 species
Adi_g015044 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Adi_g025760 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Adi_g102124 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aev_g01825 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ala_g00543 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ala_g20351 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Als_g07706 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Als_g23673 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g00922 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Aspi01Gene46905.t2 Aspi01Gene46905 component *(uS11) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0015.g013910 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Azfi_s0228.g059059 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.16 OrthoFinder output from all 47 species
Azfi_s0339.g065604 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.16 OrthoFinder output from all 47 species
Cba_g04340 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Cba_g06951 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Cba_g39017 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ceric.01G067700.1 Ceric.01G067700 component *(uS11) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Ceric.38G005500.1 Ceric.38G005500 component *(uS11) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001154.44 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.24 OrthoFinder output from all 47 species
Cre11.g480150 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Dac_g08660 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.17 OrthoFinder output from all 47 species
Dcu_g06656 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g11136 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Dcu_g27158 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Dde_g26059 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ehy_g13001 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01021436001 ATTRANS11, TRANS11 Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 OrthoFinder output from all 47 species
GSVIVT01033877001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 OrthoFinder output from all 47 species
GSVIVT01036096001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.24 OrthoFinder output from all 47 species
Gb_17066 No alias component RPS14 of SSU proteome 0.12 OrthoFinder output from all 47 species
Gb_17067 No alias component RPS14 of SSU proteome 0.13 OrthoFinder output from all 47 species
LOC_Os02g06700.1 LOC_Os02g06700 component RPS14 of SSU proteome 0.06 OrthoFinder output from all 47 species
LOC_Os02g33140.1 LOC_Os02g33140 component RPS14 of SSU proteome 0.25 OrthoFinder output from all 47 species
Len_g04076 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Len_g18745 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g19558 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g22212 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g25093 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
MA_113075g0010 No alias component RPS14 of SSU proteome 0.05 OrthoFinder output from all 47 species
Mp8g03250.1 No alias component RPS14 of SSU proteome 0.19 OrthoFinder output from all 47 species
Mp8g10900.1 No alias component RPS14 of SSU proteome 0.24 OrthoFinder output from all 47 species
Msp_g02613 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Msp_g19753 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Msp_g36870 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ore_g26083 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ore_g36754 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pir_g61833 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pnu_g09839 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pp3c15_22240V3.1 Pp3c15_22240 Ribosomal protein S11 family protein 0.11 OrthoFinder output from all 47 species
Pp3c9_21480V3.1 Pp3c9_21480 Ribosomal protein S11 family protein 0.06 OrthoFinder output from all 47 species
Ppi_g18225 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g55895 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007107 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sam_g17417 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Sam_g35851 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.17 OrthoFinder output from all 47 species
Smo183051 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 OrthoFinder output from all 47 species
Solyc02g070570.4.1 Solyc02g070570 component RPS14 of SSU proteome 0.05 OrthoFinder output from all 47 species
Solyc09g010100.3.1 Solyc09g010100 component RPS14 of SSU proteome 0.24 OrthoFinder output from all 47 species
Solyc10g083280.4.1 Solyc10g083280 component RPS14 of SSU proteome 0.22 OrthoFinder output from all 47 species
Spa_g10828 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Spa_g11705 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Spa_g51819 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.17 OrthoFinder output from all 47 species
Tin_g17077 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Zm00001e022659_P002 Zm00001e022659 component RPS14 of SSU proteome 0.12 OrthoFinder output from all 47 species
Zm00001e030302_P001 Zm00001e030302 component RPS14 of SSU proteome 0.2 OrthoFinder output from all 47 species
Zm00001e030303_P001 Zm00001e030303 component RPS14 of SSU proteome 0.16 OrthoFinder output from all 47 species
Zm00001e030304_P001 Zm00001e030304 component RPS14 of SSU proteome 0.01 OrthoFinder output from all 47 species
Zm00001e037468_P002 Zm00001e037468 component RPS14 of SSU proteome 0.22 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR001971 Ribosomal_S11 29 147
No external refs found!