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  5. AMTR_s00040p00067520

AMTR_s00040p00067520 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.33

No description available


Gene families : OG0003701 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003701_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00067520

Target Alias Description ECC score Gene Family Method Actions
Als_g28247 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g01108 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009973001 No alias UPF0496 protein At1g20180 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os03g05440.1 LOC_Os03g05440 UPF0496 protein 3 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
MA_74847g0010 No alias UPF0496 protein 3 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
Ore_g04095 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g056570.1.1 Solyc12g056570 UPF0496 protein At3g49070 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g10360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47951 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006308 DNA catabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007749 DUF677 20 297
No external refs found!