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  5. AMTR_s00038p00206970

AMTR_s00038p00206970 (SWP1, ATLSD1, LDL1,...)


Aliases : SWP1, ATLSD1, LDL1, ATSWP1, LSD1, evm_27.TU.AmTr_v1.0_scaffold00038.160

Description : Chromatin organisation.histone modifications.histone lysine methylation/demethylation.AOD group histone demethylase activities.LDL/KDM1 lysine-specific demethylase


Gene families : OG0003252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003252_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00038p00206970

Target Alias Description ECC score Gene Family Method Actions
Adi_g058521 FLD flowering time factor *(FLD) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15512 FLD flowering time factor *(FLD) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g10783 FLD flowering time factor *(FLD) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0056.g034245 FLD flowering time factor *(FLD) & original description: CDS=134-2881 0.02 OrthoFinder output from all 47 species
Ehy_g19544 FLD flowering time factor *(FLD) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02433 FLD flowering time factor *(FLD) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g11226 FLD flowering time factor *(FLD) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004347 glucose-6-phosphate isomerase activity IEP HCCA
MF GO:0004348 glucosylceramidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006094 gluconeogenesis IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006665 sphingolipid metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019319 hexose biosynthetic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046364 monosaccharide biosynthetic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
InterPro domains Description Start Stop
IPR007526 SWIRM 112 195
IPR002937 Amino_oxidase 221 646
No external refs found!