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  5. AMTR_s00038p00179320

AMTR_s00038p00179320 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00038.121

Description : Pentatricopeptide repeat-containing protein At5g66631 OS=Arabidopsis thaliana


Gene families : OG0001104 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001104_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00038p00179320
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
Adi_g014971 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05278 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g17130 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12820 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g07946 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019040001 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.02 OrthoFinder output from all 47 species
Len_g03366 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14338 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g25744 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g19603 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g06729 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32274 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g09085 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25243 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27171 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 599 646
IPR002885 Pentatricopeptide_repeat 209 251
IPR002885 Pentatricopeptide_repeat 533 564
IPR002885 Pentatricopeptide_repeat 280 308
No external refs found!