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  5. AMTR_s00038p00035160

AMTR_s00038p00035160 (GAE1,...)


Aliases : GAE1, evm_27.TU.AmTr_v1.0_scaffold00038.13

Description : Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-D-galacturonic acid synthesis.UDP-D-glucuronic acid 4-epimerase


Gene families : OG0000504 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000504_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00038p00035160
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
Aev_g05938 GAE2 UDP-D-glucuronic acid 4-epimerase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g19129 GAE2 UDP-D-glucuronic acid 4-epimerase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37648 GAE2 UDP-D-glucuronic acid 4-epimerase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04214 GAE1 UDP-D-glucuronic acid 4-epimerase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene11338.t1 GAE1, Aspi01Gene11338 UDP-D-glucuronic acid 4-epimerase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17269 GAE1 UDP-D-glucuronic acid 4-epimerase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23332 GAE2 UDP-D-glucuronic acid 4-epimerase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01018554001 GAE2 Carbohydrate metabolism.nucleotide sugar... 0.03 OrthoFinder output from all 47 species
LOC_Os09g32670.1 GAE6, LOC_Os09g32670 UDP-D-glucuronic acid 4-epimerase 0.03 OrthoFinder output from all 47 species
Mp7g08710.1 GAE1 UDP-D-glucuronic acid 4-epimerase 0.03 OrthoFinder output from all 47 species
Pir_g09520 GAE1 UDP-D-glucuronic acid 4-epimerase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04502 GAE1 UDP-D-glucuronic acid 4-epimerase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g06740 No alias UDP-D-glucuronic acid 4-epimerase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g092330.3.1 GAE6, Solyc09g092330 UDP-D-glucuronic acid 4-epimerase 0.08 OrthoFinder output from all 47 species
Zm00001e034613_P001 GAE6, Zm00001e034613 UDP-D-glucuronic acid 4-epimerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
BP GO:0044237 cellular metabolic process IEA Interproscan
MF GO:0050662 obsolete coenzyme binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004014 adenosylmethionine decarboxylase activity IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006597 spermine biosynthetic process IEP HCCA
BP GO:0008215 spermine metabolic process IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001509 Epimerase_deHydtase 100 357
No external refs found!