AMTR_s00036p00235910 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00036.181

No description available


Gene families : OG0001047 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001047_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00036p00235910

Target Alias Description ECC score Gene Family Method Actions
AT1G33680 No alias KH domain-containing protein 0.03 OrthoFinder output from all 47 species
AT2G25970 No alias KH domain-containing protein 0.04 OrthoFinder output from all 47 species
Adi_g014211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g077319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g103366 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g105498 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02435 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g33204 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13995 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g29246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32757 No alias virus infection resistance factor *(BTR1) & original... 0.03 OrthoFinder output from all 47 species
Aob_g08444 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g11832 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0004.g008730 No alias not classified & original description: CDS=100-2877 0.05 OrthoFinder output from all 47 species
Azfi_s0195.g057223 No alias not classified & original description: CDS=123-1967 0.02 OrthoFinder output from all 47 species
Cba_g72516 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g72682 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g78248 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G027700.1 Ceric.03G027700 not classified & original description: pacid=50573278... 0.04 OrthoFinder output from all 47 species
Ceric.20G036400.1 Ceric.20G036400 not classified & original description: pacid=50567078... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.157 No alias Protein BTR1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre06.g250800 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g11627 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11741 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02873 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035354001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01036378001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_31122 No alias Protein BTR1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os02g13130.1 LOC_Os02g13130 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g24459 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02045 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10191 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_10434164g0020 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_13061g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Ore_g17404 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g26146 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g38566 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g06700 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g19200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10281 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63768 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15729 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g44801 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo437890 No alias Protein BTR1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc11g040370.2.1 Solyc11g040370 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Solyc12g095960.3.1 Solyc12g095960 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Tin_g07129 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e014452_P001 Zm00001e014452 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e021868_P005 Zm00001e021868 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e024927_P001 Zm00001e024927 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e029163_P001 Zm00001e029163 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005665 RNA polymerase II, core complex IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 134 198
IPR004088 KH_dom_type_1 228 292
No external refs found!