1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00036p00200680

AMTR_s00036p00200680 (AtTHO6, DWA1, THO6,...)


Aliases : AtTHO6, DWA1, THO6, evm_27.TU.AmTr_v1.0_scaffold00036.114

Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC6 component


Gene families : OG0007143 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007143_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00036p00200680

Target Alias Description ECC score Gene Family Method Actions
Cba_g07865 AtTHO6, DWA1, THO6 component *(THOC6) of mRNP trafficking THO subcomplex &... 0.05 OrthoFinder output from all 47 species
Nbi_g00801 AtTHO6, DWA1, THO6 component *(THOC6) of mRNP trafficking THO subcomplex &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006808 regulation of nitrogen utilization IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0032101 regulation of response to external stimulus IEP HCCA
BP GO:0032104 regulation of response to extracellular stimulus IEP HCCA
BP GO:0032107 regulation of response to nutrient levels IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 198 236
IPR001680 WD40_repeat 89 127
No external refs found!