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  5. AMTR_s00033p00241280

AMTR_s00033p00241280 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00033.259

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.G2-like GARP transcription factor


Gene families : OG0001052 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00033p00241280

Target Alias Description ECC score Gene Family Method Actions
AT1G25550 No alias myb-like transcription factor family protein 0.07 OrthoFinder output from all 47 species
Adi_g030747 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Als_g15773 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Als_g21951 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g07617 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.06G020200.1 Ceric.06G020200 GARP subgroup HHO transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dcu_g18561 No alias GARP subgroup HHO transcription factor & original... 0.01 OrthoFinder output from all 47 species
Ehy_g02562 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
LOC_Os02g22020.1 LOC_Os02g22020 G2-like GARP transcription factor 0.04 OrthoFinder output from all 47 species
Lfl_g03258 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Zm00001e003080_P001 Zm00001e003080 G2-like GARP transcription factor 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 238 289
No external refs found!