1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00033p00187020

AMTR_s00033p00187020 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00033.141

Description : Pentatricopeptide repeat-containing protein At2g01390 OS=Arabidopsis thaliana


Gene families : OG0001104 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001104_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00033p00187020
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
Ceric.16G010400.1 Ceric.16G010400 not classified & original description: pacid=50589761... 0.03 OrthoFinder output from all 47 species
Ceric.26G072600.1 EMB2750, Ceric.26G072600 not classified & original description: pacid=50599096... 0.03 OrthoFinder output from all 47 species
GSVIVT01019029001 No alias Pentatricopeptide repeat-containing protein At2g01390... 0.04 OrthoFinder output from all 47 species
LOC_Os01g07340.1 LOC_Os01g07340 Pentatricopeptide repeat-containing protein At5g66631... 0.02 OrthoFinder output from all 47 species
Lfl_g05606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g21649 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_89328g0010 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.04 OrthoFinder output from all 47 species
Solyc01g008480.4.1 Solyc01g008480 Pentatricopeptide repeat-containing protein At2g01390... 0.05 OrthoFinder output from all 47 species
Solyc02g065510.1.1 Solyc02g065510 Pentatricopeptide repeat-containing protein At5g66631... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 423 451
IPR002885 Pentatricopeptide_repeat 202 245
IPR002885 Pentatricopeptide_repeat 486 528
IPR002885 Pentatricopeptide_repeat 131 179
No external refs found!