AMTR_s00032p00231660 (EIF4E, CUM1,...)

Aliases : EIF4E, CUM1, AT.EIF4E1, eIF4E1, evm_27.TU.AmTr_v1.0_scaffold00032.256

Description : Protein biosynthesis.translation initiation.mRNA loading.eIF4F mRNA unwinding complex.eIF4E component

Gene families : OG0001969 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001969_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00032p00231660

Target	Alias	Description	ECC score	Gene Family Method
Adi_g007830	EIF4E, CUM1,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g05950	EIF4E, CUM1,...	component *(eIF4E) of eIF4F mRNA unwinding complex &...	0.03	OrthoFinder output from all 47 species
Ceric.19G043700.1	EIF4E, CUM1,...	component *(eIF-iso4E) of eIF-iso4F unwinding complex &...	0.03	OrthoFinder output from all 47 species
Ceric.28G004300.1	EIF4E, CUM1,...	component *(eIF4E) of eIF4F mRNA unwinding complex &...	0.04	OrthoFinder output from all 47 species
Dac_g09181	EIF4E, CUM1,...	component *(eIF-iso4E) of eIF-iso4F unwinding complex &...	0.04	OrthoFinder output from all 47 species
Dcu_g00736	EIF4E, CUM1,...	component *(eIF-iso4E) of eIF-iso4F unwinding complex &...	0.04	OrthoFinder output from all 47 species
GSVIVT01027903001	LSP, LSP1,...	Protein biosynthesis.translation initiation.mRNA...	0.03	OrthoFinder output from all 47 species
Msp_g05098	EIF4E, CUM1,...	component *(eIF-iso4E) of eIF-iso4F unwinding complex &...	0.03	OrthoFinder output from all 47 species
Ppi_g03681	EIF4E, CUM1,...	component *(eIF4E) of eIF4F mRNA unwinding complex &...	0.02	OrthoFinder output from all 47 species
Tin_g00239	EIF4E, CUM1,...	component *(eIF-iso4E) of eIF-iso4F unwinding complex &...	0.04	OrthoFinder output from all 47 species
Tin_g01493	EIF4E, CUM1,...	component *(eIF4E) of eIF4F mRNA unwinding complex &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003743	translation initiation factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006413	translational initiation	IEA	Interproscan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001040	TIF_eIF_4E	41	178

External Links

No external refs found!