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  5. AMTR_s00032p00197250

AMTR_s00032p00197250 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00032.178

Description : Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0001250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001250_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00032p00197250

Target Alias Description ECC score Gene Family Method Actions
AT5G46100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Gb_12262 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.04 OrthoFinder output from all 47 species
LOC_Os01g63400.1 LOC_Os01g63400 Pentatricopeptide repeat-containing protein At3g09060... 0.05 OrthoFinder output from all 47 species
LOC_Os02g42210.1 LOC_Os02g42210 Pentatricopeptide repeat-containing protein At4g36680,... 0.04 OrthoFinder output from all 47 species
LOC_Os05g04160.1 LOC_Os05g04160 Pentatricopeptide repeat-containing protein At3g48810... 0.03 OrthoFinder output from all 47 species
LOC_Os06g30420.1 EMB1025, LOC_Os06g30420 Pentatricopeptide repeat-containing protein At4g20090... 0.02 OrthoFinder output from all 47 species
LOC_Os08g39050.1 LOC_Os08g39050 Pentatricopeptide repeat-containing protein At1g80150,... 0.03 OrthoFinder output from all 47 species
MA_131324g0010 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.04 OrthoFinder output from all 47 species
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.03 OrthoFinder output from all 47 species
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.03 OrthoFinder output from all 47 species
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.02 OrthoFinder output from all 47 species
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Solyc02g085650.4.1 Solyc02g085650 Pentatricopeptide repeat-containing protein At4g36680,... 0.04 OrthoFinder output from all 47 species
Solyc09g014210.3.1 Solyc09g014210 Pentatricopeptide repeat-containing protein At3g09060... 0.03 OrthoFinder output from all 47 species
Solyc10g005280.1.1 PPR336, Solyc10g005280 PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.04 OrthoFinder output from all 47 species
Solyc11g068470.3.1 Solyc11g068470 group-II intron mitochondrial splicing factor (MISF74) 0.04 OrthoFinder output from all 47 species
Tin_g08209 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015190_P001 Zm00001e015190 Pentatricopeptide repeat-containing protein At2g18520,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 121 146
IPR002885 Pentatricopeptide_repeat 184 232
IPR002885 Pentatricopeptide_repeat 289 338
No external refs found!