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  5. AMTR_s00032p00194040

AMTR_s00032p00194040 (CTS, ACN2, PED3,...)


Aliases : CTS, ACN2, PED3, AtABCD1, PXA1, evm_27.TU.AmTr_v1.0_scaffold00032.176

Description : Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter


Gene families : OG0003180 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003180_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00032p00194040
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0048.g030599 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: CDS=293-4504 0.02 OrthoFinder output from all 47 species
Msp_g01684 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05350 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0138.g022570 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: CDS=217-4257 0.02 OrthoFinder output from all 47 species
Tin_g20110 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006810 transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003995 acyl-CoA dehydrogenase activity IEP HCCA
MF GO:0003997 acyl-CoA oxidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006635 fatty acid beta-oxidation IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009062 fatty acid catabolic process IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
BP GO:0019395 fatty acid oxidation IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0034440 lipid oxidation IEP HCCA
CC GO:0042579 microbody IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044242 cellular lipid catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
MF GO:0052890 oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor IEP HCCA
BP GO:0072329 monocarboxylic acid catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 1143 1294
IPR003439 ABC_transporter-like_ATP-bd 485 607
No external refs found!