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  5. AMTR_s00032p00189440

AMTR_s00032p00189440 (VSR6, VSR3;3,...)


Aliases : VSR6, VSR3;3, BP80-3;3, evm_27.TU.AmTr_v1.0_scaffold00032.170

Description : Vesicle trafficking.endomembrane trafficking.vacuolar sorting.VSR vacuolar sorting receptor


Gene families : OG0000585 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000585_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00032p00189440

Target Alias Description ECC score Gene Family Method Actions
AT4G20110 VSR7, BP80-3;1, VSR3;1 VACUOLAR SORTING RECEPTOR 7 0.03 OrthoFinder output from all 47 species
Adi_g024445 VSR2;2, ATVSR3,... lytic vacuole protein sorting receptor *(VSR) & original... 0.02 OrthoFinder output from all 47 species
Adi_g107500 VSR4, VSR2;1,... lytic vacuole protein sorting receptor *(VSR) & original... 0.02 OrthoFinder output from all 47 species
Ala_g06856 VSR4, VSR2;1,... lytic vacuole protein sorting receptor *(VSR) & original... 0.03 OrthoFinder output from all 47 species
Aob_g05132 VSR2;2, ATVSR3,... lytic vacuole protein sorting receptor *(VSR) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene04715.t1 VSR2;2, ATVSR3,... lytic vacuole protein sorting receptor *(VSR) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene13131.t1 VSR2;2, ATVSR3,... lytic vacuole protein sorting receptor *(VSR) & original... 0.02 OrthoFinder output from all 47 species
Dac_g12502 VSR2;2, ATVSR3,... lytic vacuole protein sorting receptor *(VSR) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g07050 VSR2;2, ATVSR3,... lytic vacuole protein sorting receptor *(VSR) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g08227 VSR2;2, ATVSR3,... lytic vacuole protein sorting receptor *(VSR) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g05912 VSR4, VSR2;1,... lytic vacuole protein sorting receptor *(VSR) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g14079 VSR4, VSR2;1,... lytic vacuole protein sorting receptor *(VSR) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os03g21720.1 AtVSR2,... vacuolar sorting receptor (VSR) 0.03 OrthoFinder output from all 47 species
LOC_Os04g52190.1 VSR6, VSR3;3,... vacuolar sorting receptor (VSR) 0.03 OrthoFinder output from all 47 species
LOC_Os06g45380.1 VSR6, VSR3;3,... vacuolar sorting receptor (VSR) 0.06 OrthoFinder output from all 47 species
Mp7g13540.1 VSR4, VSR2;1,... vacuolar sorting receptor (VSR) 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005212 VSR2;2, ATVSR3,... lytic vacuole protein sorting receptor *(VSR) & original... 0.02 OrthoFinder output from all 47 species
Sam_g35259 No alias lytic vacuole protein sorting receptor *(VSR) & original... 0.02 OrthoFinder output from all 47 species
Sam_g49308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g081970.4.1 VSR6, VSR3;3,... vacuolar sorting receptor (VSR) 0.03 OrthoFinder output from all 47 species
Spa_g21055 VSR4, VSR2;1,... lytic vacuole protein sorting receptor *(VSR) & original... 0.03 OrthoFinder output from all 47 species
Spa_g25553 VSR4, VSR2;1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47381 VSR2;2, ATVSR3,... lytic vacuole protein sorting receptor *(VSR) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e037729_P002 VSR6, VSR3;3,... vacuolar sorting receptor (VSR) 0.03 OrthoFinder output from all 47 species
Zm00001e038238_P001 VSR2;2, ATVSR3,... vacuolar sorting receptor (VSR) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR026823 cEGF 500 518
IPR003137 PA_domain 94 166
No external refs found!