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  5. AMTR_s00032p00159210

AMTR_s00032p00159210 (PAL4,...)


Aliases : PAL4, evm_27.TU.AmTr_v1.0_scaffold00032.129

Description : Secondary metabolism.phenolics.p-coumaroyl-CoA synthesis.phenylalanine ammonia lyase (PAL)


Gene families : OG0000270 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000270_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00032p00159210
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00201930 ATPAL2, PAL2,... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.03 OrthoFinder output from all 47 species
AT2G37040 ATPAL1, PAL1 PHE ammonia lyase 1 0.06 OrthoFinder output from all 47 species
AT3G53260 ATPAL2, PAL2 phenylalanine ammonia-lyase 2 0.03 OrthoFinder output from all 47 species
Adi_g018720 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018721 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g084112 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g107906 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g15105 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g37417 ATPAL2, PAL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g39212 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g39213 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24727 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g34002 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g37142 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g37161 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62284 ATPAL1, PAL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13438 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02564 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g27204 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene05555.t1 PAL4, Aspi01Gene05555 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07514.t1 PAL4, Aspi01Gene07514 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18087.t1 ATPAL1, PAL1,... EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene41825.t1 PAL4, Aspi01Gene41825 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0009.g011807 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2211 0.04 OrthoFinder output from all 47 species
Azfi_s0096.g043679 PAL4 EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2310 0.04 OrthoFinder output from all 47 species
Cba_g04033 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20387 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g28767 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G035200.1 PAL4, Ceric.14G035200 EC_4.3 carbon-nitrogen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.28G008100.1 PAL4, Ceric.28G008100 EC_4.3 carbon-nitrogen lyase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.35G045000.1 PAL4, Ceric.35G045000 EC_4.3 carbon-nitrogen lyase & original description:... 0.05 OrthoFinder output from all 47 species
Dcu_g01768 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g24302 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g35691 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15896 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07006 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08593 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g18475 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g25215 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01006148001 PAL4 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.05 OrthoFinder output from all 47 species
GSVIVT01015123001 PAL4 Phenylalanine ammonia-lyase OS=Pinus taeda 0.04 OrthoFinder output from all 47 species
GSVIVT01015124001 ATPAL2, PAL2 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.03 OrthoFinder output from all 47 species
GSVIVT01015138001 ATPAL2, PAL2 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 OrthoFinder output from all 47 species
GSVIVT01024292001 ATPAL1, PAL1 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.05 OrthoFinder output from all 47 species
GSVIVT01024293001 ATPAL1, PAL1 Enzyme classification.EC_4 lyases.EC_4.3 carbon-nitrogen... 0.02 OrthoFinder output from all 47 species
GSVIVT01024295001 ATPAL1, PAL1 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.06 OrthoFinder output from all 47 species
GSVIVT01024303001 ATPAL1, PAL1 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 OrthoFinder output from all 47 species
GSVIVT01024315001 ATPAL1, PAL1 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.03 OrthoFinder output from all 47 species
GSVIVT01025703001 ATPAL2, PAL2 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.06 OrthoFinder output from all 47 species
Gb_01672 ATPAL2, PAL2 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Gb_10978 ATPAL2, PAL2 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Gb_16672 ATPAL1, PAL1 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Gb_31408 PAL4 phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Gb_41796 PAL4 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
LOC_Os02g41630.2 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
LOC_Os02g41650.3 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.06 OrthoFinder output from all 47 species
LOC_Os02g41670.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.05 OrthoFinder output from all 47 species
LOC_Os02g41680.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.08 OrthoFinder output from all 47 species
LOC_Os04g43760.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
LOC_Os04g43800.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
LOC_Os05g35290.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.07 OrthoFinder output from all 47 species
Len_g30539 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g34057 ATPAL2, PAL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g50108 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g13042 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g14564 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
MA_73113g0010 PAL4 phenylalanine ammonia lyase (PAL) 0.02 OrthoFinder output from all 47 species
Mp1g05190.1 ATPAL1, PAL1 phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Mp1g05220.1 PAL4 phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Mp1g10150.1 PAL4 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Mp4g14110.1 ATPAL1, PAL1 phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Mp4g14130.1 ATPAL2, PAL2 Phenylalanine ammonia-lyase class 1 (Fragment)... 0.02 OrthoFinder output from all 47 species
Mp4g14140.1 ATPAL1, PAL1 phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Mp4g14160.1 ATPAL2, PAL2 phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Mp4g14210.1 PAL4 phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Msp_g20938 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31510 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g08420 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g19081 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10299 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10300 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16429 ATPAL2, PAL2 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40543 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g30258 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g30613 ATPAL2, PAL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c21_7670V3.1 PAL4, Pp3c21_7670 phenylalanine ammonia-lyase 4 0.01 OrthoFinder output from all 47 species
Ppi_g10129 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16617 ATPAL2, PAL2 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17800 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30570 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57238 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007129 PAL4 EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2310 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0091.g018764 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2271 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023741 PAL4 EC_4.3 carbon-nitrogen lyase & original description: CDS=1-1545 0.02 OrthoFinder output from all 47 species
Solyc00g500095.1.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Solyc00g500353.1.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Solyc03g042560.3.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Solyc03g078280.3.1 ATPAL2, PAL2,... Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... 0.03 OrthoFinder output from all 47 species
Solyc05g056170.3.1 ATPAL2, PAL2,... phenylalanine ammonia lyase (PAL) 0.02 OrthoFinder output from all 47 species
Solyc09g007910.4.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Solyc10g011920.3.1 ATPAL1, PAL1,... Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... 0.06 OrthoFinder output from all 47 species
Solyc10g011930.1.1 ATPAL1, PAL1,... Phenylalanine ammonia-lyase OS=Solanum lycopersicum... 0.07 OrthoFinder output from all 47 species
Spa_g08001 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g23160 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26458 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g46269 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g03458 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08349 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g14732 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005064_P001 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Zm00001e015154_P001 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.02 OrthoFinder output from all 47 species
Zm00001e015155_P001 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.05 OrthoFinder output from all 47 species
Zm00001e015157_P001 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Zm00001e023031_P002 PAL4, Zm00001e023031 phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Zm00001e023032_P002 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.02 OrthoFinder output from all 47 species
Zm00001e023033_P001 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0009058 biosynthetic process IEA Interproscan
MF GO:0016841 ammonia-lyase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006098 pentose-phosphate shunt IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006740 NADPH regeneration IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0048037 obsolete cofactor binding IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0051156 glucose 6-phosphate metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001106 Aromatic_Lyase 36 527
No external refs found!