AMTR_s00032p00104970 (HVT1, ATVT-1,...)

Aliases : HVT1, ATVT-1, evm_27.TU.AmTr_v1.0_scaffold00032.66

Description : DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana

Gene families : OG0005875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005875_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00032p00104970

Target	Alias	Description	ECC score	Gene Family Method
Aev_g16191	HVT1, ATVT-1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g04487	HVT1, ATVT-1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.16G053600.1	HVT1, ATVT-1,...	not classified & original description: pacid=50590253...	0.03	OrthoFinder output from all 47 species
Dcu_g02016	HVT1, ATVT-1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g06805	HVT1, ATVT-1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Gb_13707	HVT1, ATVT-1	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os01g56190.1	HVT1, ATVT-1,...	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Lfl_g02414	HVT1, ATVT-1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10434659g0010	HVT1, ATVT-1	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Msp_g31546	HVT1, ATVT-1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g26937	HVT1, ATVT-1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g19921	HVT1, ATVT-1	not classified & original description: none	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
BP	GO:0006810	transport	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004559	alpha-mannosidase activity	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006013	mannose metabolic process	IEP	HCCA
MF	GO:0015923	mannosidase activity	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	572	657
IPR001482	T2SS/T4SS	170	213
IPR011709	DEAD-box_helicase_OB_fold	856	967
IPR007502	Helicase-assoc_dom	722	815

External Links

No external refs found!