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  5. AMTR_s00032p00045230

AMTR_s00032p00045230 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00032.24

Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0002401 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002401_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00032p00045230
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00269160 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.05 OrthoFinder output from all 47 species
AMTR_s00002p00041060 evm_27.TU.AmTr_v1... Nutrient uptake.copper uptake.regulation.bHLH-Ib... 0.04 OrthoFinder output from all 47 species
AT1G10585 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G12540 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G62975 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G25400 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G25410 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G51780 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.1 OrthoFinder output from all 47 species
AT5G51790 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
Aop_g50199 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01018461001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
GSVIVT01020561001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
Gb_26737 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_10290037g0010 No alias transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
MA_141559g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_14352g0010 No alias transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
MA_321195g0010 No alias transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
MA_331265g0010 No alias transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
MA_384190g0010 No alias transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
MA_68586g0010 BHLH101 transcription factor (bHLH). iron/copper homeostasis... 0.05 OrthoFinder output from all 47 species
MA_8008760g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_938775g0010 No alias transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Pir_g39777 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g47256 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g50631 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g078130.3.1 Solyc02g078130 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Solyc03g114230.2.1 Solyc03g114230 Transcription factor bHLH162 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc03g114237.1.1 Solyc03g114237 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc04g056535.1.1 Solyc04g056535 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc10g079650.2.1 BHLH100, Solyc10g079650 transcription factor (bHLH). iron/copper homeostasis... 0.04 OrthoFinder output from all 47 species
Solyc10g079660.3.1 ORG2, BHLH038,... transcription factor (bHLH). iron/copper homeostasis... 0.05 OrthoFinder output from all 47 species
Solyc10g079680.3.1 ORG2, BHLH038,... transcription factor (bHLH). iron/copper homeostasis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 67 113
No external refs found!