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  5. AMTR_s00032p00029450

AMTR_s00032p00029450 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00032.10

Description : Pentatricopeptide repeat-containing protein At4g20770 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00032p00029450

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00177p00030580 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g12770... 0.09 OrthoFinder output from all 47 species
Adi_g067716 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g03341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07008 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20733 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11730 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g49684 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g41650.1 LOC_Os01g41650 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
LOC_Os11g37330.2 LOI1, MEF11,... RNA editing factor (MEF11) 0.03 OrthoFinder output from all 47 species
Msp_g26081 MEF9 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28345 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g41100 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g41365 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43841 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g44930 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g45762 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g42269 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g079380.2.1 CRR22, Solyc02g079380 RNA editing factor (CRR22) 0.03 OrthoFinder output from all 47 species
Zm00001e011923_P001 Zm00001e011923 Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
Zm00001e036537_P001 Zm00001e036537 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 81 110
IPR002885 Pentatricopeptide_repeat 429 476
IPR002885 Pentatricopeptide_repeat 531 577
IPR002885 Pentatricopeptide_repeat 631 679
IPR002885 Pentatricopeptide_repeat 364 412
IPR002885 Pentatricopeptide_repeat 112 159
IPR002885 Pentatricopeptide_repeat 216 246
IPR002885 Pentatricopeptide_repeat 338 358
IPR002885 Pentatricopeptide_repeat 777 803
IPR002885 Pentatricopeptide_repeat 188 212
No external refs found!