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  5. AMTR_s00030p00239430

AMTR_s00030p00239430 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00030.208

Description : Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0007144 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007144_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00030p00239430

Target Alias Description ECC score Gene Family Method Actions
Adi_g059076 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11599 No alias trans-splicing factor *(PPR4) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11518 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g14938 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01034651001 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.03 OrthoFinder output from all 47 species
Msp_g06326 No alias trans-splicing factor *(PPR4) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g006680.3.1 Solyc11g006680 Pentatricopeptide repeat-containing protein At5g04810,... 0.02 OrthoFinder output from all 47 species
Zm00001e041970_P002 Zm00001e041970 Pentatricopeptide repeat-containing protein At5g04810,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 723 771
IPR002885 Pentatricopeptide_repeat 547 596
IPR002885 Pentatricopeptide_repeat 477 525
IPR002885 Pentatricopeptide_repeat 617 665
IPR002885 Pentatricopeptide_repeat 446 475
IPR002885 Pentatricopeptide_repeat 411 440
IPR002885 Pentatricopeptide_repeat 376 401
IPR002885 Pentatricopeptide_repeat 341 370
IPR000504 RRM_dom 162 234
IPR002885 Pentatricopeptide_repeat 310 337
IPR002885 Pentatricopeptide_repeat 789 821
IPR002885 Pentatricopeptide_repeat 684 716
No external refs found!