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  5. AMTR_s00030p00161650

AMTR_s00030p00161650 (PUB23,...)


Aliases : PUB23, evm_27.TU.AmTr_v1.0_scaffold00030.100

Description : E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana


Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00030p00161650
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00199950 evm_27.TU.AmTr_v1... U-box domain-containing protein 31 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00043p00215340 PUB8, B80,... U-box domain-containing protein 8 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT3G11840 PUB24 plant U-box 24 0.04 OrthoFinder output from all 47 species
AT3G52450 PUB22 plant U-box 22 0.03 OrthoFinder output from all 47 species
AT5G37490 No alias ARM repeat superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g015979 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g01116 PUB25 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05258 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11423 PUB15 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12715 PUB25 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28879 PUB26 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g30969 PUB25 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g35657 PUB25 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g37093 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g40105 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g41669 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g57047 PUB23 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g62359 PUB26 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07152 PUB25 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g18761 PUB29, ATPUB29 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene12032.t1 PUB25, Aspi01Gene12032 U-Box-group-III E3 ubiquitin ligase & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene15171.t1 PUB29, ATPUB29,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15674.t1 PUB26, Aspi01Gene15674 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18444.t1 PUB23, Aspi01Gene18444 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18451.t1 PUB25, Aspi01Gene18451 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18452.t1 PUB25, Aspi01Gene18452 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18453.t1 PUB25, Aspi01Gene18453 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18467.t1 PUB23, Aspi01Gene18467 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene19337.t1 PUB26, Aspi01Gene19337 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene19351.t1 Aspi01Gene19351 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene27391.t1 PUB26, Aspi01Gene27391 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene35689.t1 PUB25, Aspi01Gene35689 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene43214.t1 PUB24, Aspi01Gene43214 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene44320.t1 PUB23, Aspi01Gene44320 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51615.t1 PUB15, Aspi01Gene51615 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51624.t1 PUB15, Aspi01Gene51624 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16814 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g78214 PUB25 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.08G030400.1 PUB26, Ceric.08G030400 U-Box-group-III E3 ubiquitin ligase & original... 0.02 OrthoFinder output from all 47 species
Ceric.21G081600.1 PUB26, Ceric.21G081600 U-Box-group-III E3 ubiquitin ligase & original... 0.04 OrthoFinder output from all 47 species
Dcu_g26825 PUB26 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g01464 PUB26 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03660 PUB23 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14303 PUB25 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011139001 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01011140001 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01011616001 CMPG1, ATCMPG1 U-box domain-containing protein 20 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01026542001 CMPG2, ATCMPG2 U-box domain-containing protein 27 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_02490 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Gb_02633 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_17119 PUB22 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_19502 PUB23 U-box domain-containing protein 25 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Gb_27794 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_29851 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os01g64570.1 PUB23, LOC_Os01g64570 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os02g34410.1 PUB25, LOC_Os02g34410 U-box domain-containing protein 25 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os02g50460.1 LOC_Os02g50460 U-box domain-containing protein 20 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os03g13740.1 LOC_Os03g13740 U-box domain-containing protein 20 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g34030.1 PUB23, LOC_Os04g34030 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
LOC_Os04g49970.1 PUB23, LOC_Os04g49970 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os04g58920.1 PUB23, LOC_Os04g58920 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os12g06410.1 PUB24, LOC_Os12g06410 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Lfl_g22781 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g24284 PUB25 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430196g0010 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10432179g0010 PUB22 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10432813g0010 PUB22 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10433846g0010 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_1663g0020 PUB25 U-box domain-containing protein 25 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_17715g0010 CMPG1, ATCMPG1 U-box domain-containing protein 20 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_48004g0010 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_5536318g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_58844g0020 PUB22 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
MA_61761g0010 PUB25 U-box domain-containing protein 25 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
MA_684442g0010 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_84154g0010 PUB25 U-box domain-containing protein 25 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_9494855g0010 PUB26 U-box domain-containing protein 25 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_95662g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g22750.1 PUB26 U-box domain-containing protein 26 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g47390 PUB25 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c22_7680V3.1 Pp3c22_7680 CYS, MET, PRO, and GLY protein 2 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002717 PUB26 not classified & original description: CDS=1-1404 0.03 OrthoFinder output from all 47 species
Sam_g15131 No alias E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Smo172230 No alias U-box domain-containing protein 14 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc01g007000.4.1 PUB22, Solyc01g007000 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Solyc01g007030.3.1 PUB22, Solyc01g007030 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Solyc01g007050.3.1 PUB24, Solyc01g007050 E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Solyc01g009320.2.1 PUB23, Solyc01g009320 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc01g009330.1.1 PUB22, Solyc01g009330 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc04g008100.3.1 Solyc04g008100 U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc06g074140.1.1 PUB24, Solyc06g074140 E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc11g006030.1.1 Solyc11g006030 U-box domain-containing protein 21 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc11g068920.1.1 PUB23, Solyc11g068920 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc11g068940.1.1 PUB24, Solyc11g068940 E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e006484_P001 PUB23, Zm00001e006484 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Zm00001e007109_P001 PUB23, Zm00001e007109 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e008167_P001 PUB23, Zm00001e008167 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e014752_P001 PUB23, Zm00001e014752 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e014766_P001 CMPG2, ATCMPG2,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Zm00001e015763_P001 Zm00001e015763 U-box domain-containing protein 21 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Zm00001e019173_P001 PUB23, Zm00001e019173 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e022698_P001 PUB26, Zm00001e022698 U-box domain-containing protein 25 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e039417_P001 PUB23, Zm00001e039417 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEA Interproscan
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 6 73
No external refs found!