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  5. AMTR_s00030p00026320

AMTR_s00030p00026320 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00030.6

Description : Vesicle trafficking.autophagosome formation.ATG1-13 autophagosome assembly control complex.ATG13 accessory component


Gene families : OG0001611 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001611_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00030p00026320

Target Alias Description ECC score Gene Family Method Actions
Adi_g010434 No alias accessory component *(ATG13) of ATG1-13 autophagosome... 0.03 OrthoFinder output from all 47 species
Aop_g32834 No alias accessory component *(ATG13) of ATG1-13 autophagosome... 0.03 OrthoFinder output from all 47 species
Cba_g14172 No alias accessory component *(ATG13) of ATG1-13 autophagosome... 0.02 OrthoFinder output from all 47 species
Cre16.g659000 No alias Vesicle trafficking.autophagosome formation.ATG1-13... 0.01 OrthoFinder output from all 47 species
Dac_g15607 No alias accessory component *(ATG13) of ATG1-13 autophagosome... 0.02 OrthoFinder output from all 47 species
Gb_24186 No alias accessory component ATG13 of ATG1-13 autophagosome... 0.03 OrthoFinder output from all 47 species
Msp_g08109 No alias accessory component *(ATG13) of ATG1-13 autophagosome... 0.03 OrthoFinder output from all 47 species
Sam_g11231 No alias accessory component *(ATG13) of ATG1-13 autophagosome... 0.02 OrthoFinder output from all 47 species
Zm00001e009081_P002 Zm00001e009081 accessory component ATG13 of ATG1-13 autophagosome... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR018731 Atg13_N 19 168
IPR018731 Atg13_N 212 310
No external refs found!