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  5. AMTR_s00029p00238270

AMTR_s00029p00238270 (VLN4, ATVLN4,...)


Aliases : VLN4, ATVLN4, evm_27.TU.AmTr_v1.0_scaffold00029.399

Description : Cytoskeleton.microfilament network.actin polymerisation.villin actin-crosslinking factor


Gene families : OG0000479 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000479_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00238270

Target Alias Description ECC score Gene Family Method Actions
AT2G41740 ATVLN2, VLN2 villin 2 0.03 OrthoFinder output from all 47 species
Adi_g022412 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085788 VLN4, ATVLN4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02593 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12863 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g40168 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g02237 VLN4, ATVLN4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01024752001 VLN1, ATVLN1 Cytoskeleton.microfilament network.actin... 0.03 OrthoFinder output from all 47 species
Gb_38614 VLN4, ATVLN4 villin actin-crosslinking factor 0.03 OrthoFinder output from all 47 species
LOC_Os08g14230.1 VLN4, ATVLN4,... villin actin-crosslinking factor 0.04 OrthoFinder output from all 47 species
MA_10430359g0020 ATVLN3, VLN3 villin actin-crosslinking factor 0.03 OrthoFinder output from all 47 species
MA_10430359g0040 ATVLN3, VLN3 villin actin-crosslinking factor 0.02 OrthoFinder output from all 47 species
Ore_g05024 ATVLN2, VLN2 villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g60064 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g10560 No alias villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEA Interproscan
BP GO:0007010 cytoskeleton organization IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006071 glycerol metabolic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008889 glycerophosphodiester phosphodiesterase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
BP GO:0019400 alditol metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007123 Gelsolin-like_dom 31 110
IPR007123 Gelsolin-like_dom 272 338
IPR007123 Gelsolin-like_dom 149 217
IPR007123 Gelsolin-like_dom 636 707
IPR003128 Villin_headpiece 902 937
No external refs found!