AMTR_s00029p00193070 (ATSMC2,...)

Aliases : ATSMC2, evm_27.TU.AmTr_v1.0_scaffold00029.260

Description : Cell cycle.mitosis and meiosis.chromatin condensation.condensin I/II complex.CAP-E2/SMC2 component

Gene families : OG0005512 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005512_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00029p00193070
Cluster	HCCA: Cluster_100

Target	Alias	Description	ECC score	Gene Family Method
AT3G47460	ATSMC2	Structural maintenance of chromosomes (SMC) family protein	0.17	OrthoFinder output from all 47 species
AT5G62410	TTN3, ATSMC4,...	structural maintenance of chromosomes 2	0.19	OrthoFinder output from all 47 species
Adi_g078006	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.02	OrthoFinder output from all 47 species
Adi_g117141	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.07	OrthoFinder output from all 47 species
Aev_g40103	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.04	OrthoFinder output from all 47 species
Ala_g23199	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.09	OrthoFinder output from all 47 species
Als_g01195	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.12	OrthoFinder output from all 47 species
Aop_g05581	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.09	OrthoFinder output from all 47 species
Aspi01Gene72499.t1	ATSMC2, Aspi01Gene72499	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.11	OrthoFinder output from all 47 species
Azfi_s0003.g007776	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.08	OrthoFinder output from all 47 species
Ceric.12G044400.1	ATSMC2, Ceric.12G044400	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.22	OrthoFinder output from all 47 species
Ceric.15G020500.1	ATSMC2, Ceric.15G020500	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.21	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000615.55	TTN3, ATSMC4,...	Cell cycle.mitosis and meiosis.chromatin...	0.05	OrthoFinder output from all 47 species
Cre02.g086650	ATSMC2	Cell cycle.mitosis and meiosis.chromatin...	0.04	OrthoFinder output from all 47 species
Dac_g14763	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.08	OrthoFinder output from all 47 species
Dcu_g03186	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.2	OrthoFinder output from all 47 species
GSVIVT01018715001	ATSMC2	Cell cycle.mitosis and meiosis.chromatin...	0.1	OrthoFinder output from all 47 species
Gb_17843	ATSMC2	component CAP-E2/SMC2 of condensin I/II complex	0.16	OrthoFinder output from all 47 species
LOC_Os01g67740.1	ATSMC2, LOC_Os01g67740	component CAP-E2/SMC2 of condensin I/II complex	0.05	OrthoFinder output from all 47 species
Len_g12256	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.05	OrthoFinder output from all 47 species
Lfl_g37430	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.08	OrthoFinder output from all 47 species
MA_15346g0010	ATSMC2	component CAP-E2/SMC2 of condensin I/II complex	0.12	OrthoFinder output from all 47 species
Mp1g04330.1	ATSMC2	component CAP-E2/SMC2 of condensin I/II complex	0.14	OrthoFinder output from all 47 species
Msp_g14469	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.1	OrthoFinder output from all 47 species
Nbi_g02470	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.15	OrthoFinder output from all 47 species
Ppi_g29913	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.09	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002205	ATSMC2	not classified & original description: CDS=1309-2196	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0197.g025517	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.07	OrthoFinder output from all 47 species
Sam_g14601	No alias	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.05	OrthoFinder output from all 47 species
Smo137981	ATSMC2	Cell cycle.mitosis and meiosis.chromatin...	0.06	OrthoFinder output from all 47 species
Solyc03g093250.2.1	ATSMC2, Solyc03g093250	component CAP-E2/SMC2 of condensin I/II complex	0.11	OrthoFinder output from all 47 species
Solyc03g093260.3.1	ATSMC2, Solyc03g093260	component CAP-E2/SMC2 of condensin I/II complex	0.17	OrthoFinder output from all 47 species
Spa_g41237	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.05	OrthoFinder output from all 47 species
Tin_g10631	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.11	OrthoFinder output from all 47 species
Zm00001e018930_P001	ATSMC2, Zm00001e018930	component CAP-E2/SMC2 of condensin I/II complex	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0051276	chromosome organization	IEA	Interproscan
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005875	microtubule associated complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
CC	GO:0042555	MCM complex	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003395	RecF/RecN/SMC_N	2	1161
IPR010935	SMC_hinge	518	637

External Links

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AMTR_s00029p00193070 (ATSMC2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation