1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00029p00180180

AMTR_s00029p00180180 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.241

No description available


Gene families : OG0000666 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000666_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00180180
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AT1G75160 No alias Protein of unknown function (DUF620) 0.03 OrthoFinder output from all 47 species
AT1G79420 No alias Protein of unknown function (DUF620) 0.03 OrthoFinder output from all 47 species
AT3G55720 No alias Protein of unknown function (DUF620) 0.02 OrthoFinder output from all 47 species
AT5G06610 No alias Protein of unknown function (DUF620) 0.03 OrthoFinder output from all 47 species
AT5G66740 No alias Protein of unknown function (DUF620) 0.04 OrthoFinder output from all 47 species
Adi_g063519 No alias GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03158 No alias GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05740 No alias GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03174 No alias GTPase effector *(BDR) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene50254.t1 Aspi01Gene50254 GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63743.t1 Aspi01Gene63743 GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g62903 No alias GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g78324 No alias GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.25G061800.1 Ceric.25G061800 GTPase effector *(BDR) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.33G036700.1 Ceric.33G036700 GTPase effector *(BDR) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g14931 No alias GTPase effector *(BDR) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g39476 No alias GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009692001 No alias No description available 0.09 OrthoFinder output from all 47 species
GSVIVT01036716001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os01g55795.1 LOC_Os01g55795 GTPase effector (BDR) 0.07 OrthoFinder output from all 47 species
LOC_Os10g27110.1 LOC_Os10g27110 GTPase effector (BDR) 0.03 OrthoFinder output from all 47 species
Len_g01245 No alias GTPase effector *(BDR) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g29419 No alias GTPase effector *(BDR) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g15164 No alias GTPase effector *(BDR) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g15972 No alias GTPase effector *(BDR) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g06945 No alias GTPase effector *(BDR) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06354 No alias GTPase effector *(BDR) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11922 No alias GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004578 No alias GTPase effector *(BDR) & original description: CDS=1260-2033 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0167.g024239 No alias GTPase effector *(BDR) & original description: CDS=316-1776 0.03 OrthoFinder output from all 47 species
Sam_g11659 No alias GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19310 No alias GTPase effector *(BDR) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19311 No alias GTPase effector *(BDR) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc04g080220.3.1 Solyc04g080220 GTPase effector (BDR) 0.03 OrthoFinder output from all 47 species
Solyc05g052860.3.1 Solyc05g052860 GTPase effector (BDR) 0.01 OrthoFinder output from all 47 species
Spa_g14827 No alias GTPase effector *(BDR) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g55614 No alias GTPase effector *(BDR) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g01193 No alias GTPase effector *(BDR) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05482 No alias GTPase effector *(BDR) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0005375 copper ion transmembrane transporter activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006825 copper ion transport IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030259 lipid glycosylation IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0035434 copper ion transmembrane transport IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006873 DUF620 2 134
No external refs found!