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  5. AMTR_s00029p00156090

AMTR_s00029p00156090 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.185

No description available


Gene families : OG0001845 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001845_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00156090
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
Adi_g017303 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26838 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010242001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_05849 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g17160.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ppi_g31943 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g02068 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000153_P002 Zm00001e000153 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR005516 Remorin_C 458 565
No external refs found!